Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_GAQ_versus_KO_NA.greenbergcls.cls
#KO_GAQ_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetBMI1_DN_MEL18_DN.V1_UP
Enrichment Score (ES)0.49952307
Normalized Enrichment Score (NES)1.3299075
Nominal p-value0.0091743115
FDR q-value0.08215951
FWER p-Value0.335
Table: GSEA Results Summary



Fig 1: Enrichment plot: BMI1_DN_MEL18_DN.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]94.7930.0347Yes
2FOSL1FOS like 1, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:13718]374.3090.0655Yes
3EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]444.1980.0960Yes
4ZC3H12Azinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]514.1100.1258Yes
5SLC7A11solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]554.0830.1555Yes
6IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]574.0350.1850Yes
7C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]693.9160.2133Yes
8ITGA5integrin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6141]763.8010.2408Yes
9PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]1583.1090.2614Yes
10PIM1Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]1633.0910.2838Yes
11ABCA1ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]1753.0430.3057Yes
12CHST11carbohydrate sulfotransferase 11 [Source:HGNC Symbol;Acc:HGNC:17422]1823.0160.3276Yes
13EHD1EH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:3242]2262.7810.3467Yes
14LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]2842.5780.3640Yes
15PIEZO1piezo type mechanosensitive ion channel component 1 [Source:HGNC Symbol;Acc:HGNC:28993]3322.4370.3805Yes
16GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]3952.2800.3955Yes
17TNIP3TNFAIP3 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:19315]5272.0070.4066Yes
18CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]5661.9380.4197Yes
19ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]5821.9160.4333Yes
20NRP2neuropilin 2 [Source:HGNC Symbol;Acc:HGNC:8005]6391.8010.4449Yes
21RUSC2RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]9451.4580.4473Yes
22GFPT2glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]10101.4060.4559Yes
23FJX1four-jointed box kinase 1 [Source:HGNC Symbol;Acc:HGNC:17166]11981.2560.4600Yes
24LCP1lymphocyte cytosolic protein 1 [Source:HGNC Symbol;Acc:HGNC:6528]12131.2470.4687Yes
25FAPfibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]14051.1560.4720Yes
26KCNN4potassium calcium-activated channel subfamily N member 4 [Source:HGNC Symbol;Acc:HGNC:6293]14141.1520.4802Yes
27SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]17530.9830.4782Yes
28SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]17670.9780.4850Yes
29CDC42EP2CDC42 effector protein 2 [Source:HGNC Symbol;Acc:HGNC:16263]21780.8260.4799Yes
30ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]21950.8220.4855Yes
31ZEB2zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]22400.8030.4901Yes
32TFECtranscription factor EC [Source:HGNC Symbol;Acc:HGNC:11754]23520.7690.4927Yes
33HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]24650.7320.4951Yes
34KLF7Kruppel like factor 7 [Source:HGNC Symbol;Acc:HGNC:6350]24960.7230.4995Yes
35DUSP10dual specificity phosphatase 10 [Source:HGNC Symbol;Acc:HGNC:3065]34300.5020.4779No
36MICALL1MICAL like 1 [Source:HGNC Symbol;Acc:HGNC:29804]35530.4810.4781No
37MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]35720.4770.4811No
38TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]36410.4650.4827No
39SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]36980.4560.4845No
40GAB2GRB2 associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]37180.4510.4873No
41SIK1salt inducible kinase 1 [Source:HGNC Symbol;Acc:HGNC:11142]37380.4480.4900No
42MAP3K7CLMAP3K7 C-terminal like [Source:HGNC Symbol;Acc:HGNC:16457]39760.4000.4865No
43INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]40220.3930.4882No
44RREB1ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]41190.3740.4883No
45CSPG4chondroitin sulfate proteoglycan 4 [Source:HGNC Symbol;Acc:HGNC:2466]41240.3730.4909No
46TNFAIP6TNF alpha induced protein 6 [Source:HGNC Symbol;Acc:HGNC:11898]41320.3710.4935No
47PODXLpodocalyxin like [Source:HGNC Symbol;Acc:HGNC:9171]42830.3470.4919No
48TNFRSF8TNF receptor superfamily member 8 [Source:HGNC Symbol;Acc:HGNC:11923]45520.3040.4869No
49CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]47530.2710.4835No
50NKAIN1sodium/potassium transporting ATPase interacting 1 [Source:HGNC Symbol;Acc:HGNC:25743]48790.2500.4819No
51KMT2Alysine methyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:7132]49020.2470.4831No
52PIK3CGphosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:HGNC Symbol;Acc:HGNC:8978]52190.2000.4760No
53IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]52430.1970.4768No
54APBB2amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]52730.1940.4775No
55TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]59160.1050.4609No
56KCNN3potassium calcium-activated channel subfamily N member 3 [Source:HGNC Symbol;Acc:HGNC:6292]60580.0850.4577No
57TEKTEK receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11724]60710.0850.4580No
58ZNF639zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]64840.0280.4470No
59ADGBandroglobin [Source:HGNC Symbol;Acc:HGNC:21212]65850.0170.4444No
60FGF21fibroblast growth factor 21 [Source:HGNC Symbol;Acc:HGNC:3678]72260.0000.4271No
61ABLIM3actin binding LIM protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29132]73660.0000.4234No
62GREM1gremlin 1, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:2001]85300.0000.3919No
63TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]91280.0000.3757No
64VLDLRvery low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:12698]98170.0000.3571No
65TNFRSF9TNF receptor superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11924]100710.0000.3502No
66PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]101840.0000.3472No
67ADAM19ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]101960.0000.3469No
68ADAM12ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]101980.0000.3469No
69ADM2adrenomedullin 2 [Source:HGNC Symbol;Acc:HGNC:28898]113730.0000.3151No
70LRRC15leucine rich repeat containing 15 [Source:HGNC Symbol;Acc:HGNC:20818]116320.0000.3081No
71PTHLHparathyroid hormone like hormone [Source:HGNC Symbol;Acc:HGNC:9607]118640.0000.3019No
72VNN1vanin 1 [Source:HGNC Symbol;Acc:HGNC:12705]129390.0000.2728No
73TACR3tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]133930.0000.2606No
74GDF5growth differentiation factor 5 [Source:HGNC Symbol;Acc:HGNC:4220]136020.0000.2549No
75P2RX5purinergic receptor P2X 5 [Source:HGNC Symbol;Acc:HGNC:8536]143000.0000.2361No
76COL13A1collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]156530.0000.1995No
77HTR1D5-hydroxytryptamine receptor 1D [Source:HGNC Symbol;Acc:HGNC:5289]157060.0000.1981No
78COL16A1collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]165560.0000.1751No
79GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]169610.0000.1641No
80TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171940.0000.1579No
81MGLLmonoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]172060.0000.1576No
82FAM189A1family with sequence similarity 189 member A1 [Source:HGNC Symbol;Acc:HGNC:29075]173670.0000.1532No
83HAPLN1hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:HGNC:2380]174610.0000.1507No
84MICAMHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090]177160.0000.1438No
85PAPPApappalysin 1 [Source:HGNC Symbol;Acc:HGNC:8602]179000.0000.1389No
86CDH13cadherin 13 [Source:HGNC Symbol;Acc:HGNC:1753]187220.0000.1167No
87BMP5bone morphogenetic protein 5 [Source:HGNC Symbol;Acc:HGNC:1072]190580.0000.1076No
88MMP7matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174]190840.0000.1069No
89CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]194240.0000.0978No
90CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]194330.0000.0975No
91SCML2Scm polycomb group protein like 2 [Source:HGNC Symbol;Acc:HGNC:10581]202820.0000.0746No
92KRT75keratin 75 [Source:HGNC Symbol;Acc:HGNC:24431]220220.0000.0275No
93CPA4carboxypeptidase A4 [Source:HGNC Symbol;Acc:HGNC:15740]235490.000-0.0138No
94NPPBnatriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]237200.000-0.0184No
95LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]237820.000-0.0200No
96CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]245550.000-0.0409No
97LSAMPlimbic system associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]247680.000-0.0467No
98WNT5BWnt family member 5B [Source:HGNC Symbol;Acc:HGNC:16265]247890.000-0.0472No
99CLDN1claudin 1 [Source:HGNC Symbol;Acc:HGNC:2032]248930.000-0.0500No
100PDCD1LG2programmed cell death 1 ligand 2 [Source:HGNC Symbol;Acc:HGNC:18731]256090.000-0.0694No
101PLAURplasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:HGNC:9053]257070.000-0.0720No
102ITGB8integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]264520.000-0.0921No
103ITGB6integrin subunit beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]264550.000-0.0922No
104PAGE1PAGE family member 1 [Source:HGNC Symbol;Acc:HGNC:4107]265470.000-0.0946No
105BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]27655-0.021-0.1244No
106ASPHaspartate beta-hydroxylase [Source:HGNC Symbol;Acc:HGNC:757]27870-0.046-0.1299No
107HAS2hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]27943-0.056-0.1314No
108ITGA3integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]28015-0.064-0.1329No
109STX1Asyntaxin 1A [Source:HGNC Symbol;Acc:HGNC:11433]28127-0.076-0.1353No
110TCIMtranscriptional and immune response regulator [Source:HGNC Symbol;Acc:HGNC:1357]28537-0.124-0.1455No
111BST1bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]28627-0.133-0.1469No
112TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]28928-0.170-0.1538No
113ARNTL2aryl hydrocarbon receptor nuclear translocator like 2 [Source:HGNC Symbol;Acc:HGNC:18984]29492-0.240-0.1673No
114F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]29759-0.275-0.1725No
115VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]30198-0.330-0.1820No
116ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]30789-0.409-0.1949No
117NT5E5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021]30795-0.410-0.1921No
118TUFT1tuftelin 1 [Source:HGNC Symbol;Acc:HGNC:12422]30980-0.436-0.1939No
119SLC22A4solute carrier family 22 member 4 [Source:HGNC Symbol;Acc:HGNC:10968]31353-0.494-0.2003No
120ADGRE5adhesion G protein-coupled receptor E5 [Source:HGNC Symbol;Acc:HGNC:1711]31738-0.565-0.2066No
121STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]31950-0.599-0.2079No
122PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]32167-0.646-0.2091No
123ARL4CADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]32263-0.667-0.2068No
124COL7A1collagen type VII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2214]32488-0.712-0.2076No
125C2CD2C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]33030-0.840-0.2161No
126INHBEinhibin subunit beta E [Source:HGNC Symbol;Acc:HGNC:24029]33148-0.870-0.2130No
127JAG1jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188]33543-0.980-0.2165No
128TRIOtrio Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12303]33546-0.981-0.2094No
129CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]33897-1.093-0.2108No
130SLC6A9solute carrier family 6 member 9 [Source:HGNC Symbol;Acc:HGNC:11056]34072-1.153-0.2071No
131KIF21Bkinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]35073-1.548-0.2229No
132ADMadrenomedullin [Source:HGNC Symbol;Acc:HGNC:259]35970-2.104-0.2318No
133FADS3fatty acid desaturase 3 [Source:HGNC Symbol;Acc:HGNC:3576]36137-2.255-0.2198No
134C2CD2LC2CD2 like [Source:HGNC Symbol;Acc:HGNC:29000]36165-2.285-0.2039No
135NAV2neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]36245-2.357-0.1888No
136LHFPL2LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]36252-2.361-0.1717No
137CHST3carbohydrate sulfotransferase 3 [Source:HGNC Symbol;Acc:HGNC:1971]36268-2.375-0.1548No
138OGFRL1opioid growth factor receptor like 1 [Source:HGNC Symbol;Acc:HGNC:21378]36462-2.585-0.1412No
139WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36533-2.702-0.1233No
140PLEKHO1pleckstrin homology domain containing O1 [Source:HGNC Symbol;Acc:HGNC:24310]36654-2.853-0.1057No
141ATP13A2ATPase cation transporting 13A2 [Source:HGNC Symbol;Acc:HGNC:30213]36864-3.357-0.0869No
142ITGA4integrin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6140]37042-4.117-0.0616No
143ADRB2adrenoceptor beta 2 [Source:HGNC Symbol;Acc:HGNC:286]37054-4.242-0.0309No
144TMEM51transmembrane protein 51 [Source:HGNC Symbol;Acc:HGNC:25488]37066-4.3690.0006No
Table: GSEA details [plain text format]



Fig 2: BMI1_DN_MEL18_DN.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: BMI1_DN_MEL18_DN.V1_UP: Random ES distribution   
Gene set null distribution of ES for BMI1_DN_MEL18_DN.V1_UP