Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_GAQ_versus_KO_NA.greenbergcls.cls
#KO_GAQ_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.4780725
Normalized Enrichment Score (NES)1.282076
Nominal p-value0.02173913
FDR q-value0.11884341
FWER p-Value0.484
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]124.7380.0271Yes
2ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]244.4870.0528Yes
3ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]274.4500.0786Yes
4CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]314.3860.1039Yes
5BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]324.3740.1292Yes
6EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]444.1980.1533Yes
7MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]474.1680.1774Yes
8ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]713.8700.1992Yes
9JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1093.4670.2183Yes
10TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]1173.4290.2379Yes
11ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]1643.0820.2546Yes
12STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]2442.7150.2681Yes
13RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]3482.4010.2793Yes
14SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]4022.2720.2910Yes
15RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]4792.0840.3010Yes
16GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]4812.0800.3130Yes
17MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]5391.9870.3230Yes
18NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]5941.8840.3325Yes
19ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]6161.8460.3426Yes
20TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]8081.5890.3466Yes
21BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]8371.5610.3549Yes
22KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]8571.5440.3633Yes
23ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]9131.4930.3705Yes
24BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]9891.4220.3767Yes
25TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]11081.3240.3812Yes
26GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]11691.2860.3870Yes
27WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]12851.2100.3909Yes
28UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]13751.1690.3953Yes
29FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]15091.1070.3981Yes
30C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]15431.0910.4035Yes
31PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]17860.9680.4026Yes
32LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]18140.9560.4074Yes
33PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]18240.9510.4127Yes
34EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]18730.9350.4168Yes
35RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]19050.9270.4213Yes
36NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]20080.8890.4237Yes
37ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]20190.8850.4285Yes
38SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]20260.8830.4335Yes
39ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]21190.8500.4359Yes
40APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]22440.8020.4372Yes
41TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]22560.7980.4415Yes
42ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]22730.7930.4457Yes
43DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]22860.7880.4499Yes
44LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]23680.7630.4522Yes
45MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]24200.7500.4551Yes
46TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]24400.7440.4589Yes
47MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]25540.7050.4600Yes
48GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]26260.6830.4620Yes
49TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]26780.6710.4645Yes
50LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]28050.6380.4648Yes
51SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]28320.6340.4678Yes
52USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]28440.6310.4711Yes
53FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]28770.6220.4739Yes
54EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]29830.5900.4744Yes
55GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]29980.5880.4775Yes
56PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]30990.5730.4781Yes
57EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]32300.5450.4777No
58UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]35070.4890.4731No
59ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]36580.4620.4717No
60BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]37900.4390.4707No
61NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]38980.4170.4702No
62DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]39300.4110.4717No
63BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]40250.3920.4715No
64B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]40770.3840.4723No
65BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]42290.3550.4703No
66NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]43510.3370.4690No
67CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]44650.3190.4677No
68SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]45760.3010.4665No
69CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]48180.2610.4615No
70GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]48470.2560.4622No
71HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]50620.2240.4577No
72ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]50760.2220.4586No
73MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]51050.2170.4591No
74UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]51690.2080.4587No
75SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]55490.1530.4493No
76TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]59160.1050.4400No
77DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]60270.0880.4375No
78LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]61030.0800.4359No
79UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]61070.0800.4363No
80SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]63000.0550.4314No
81MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]63760.0450.4297No
82FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]72280.0000.4066No
83TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]88960.0000.3614No
84DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]94190.0000.3473No
85C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]95570.0000.3436No
86ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]99950.0000.3318No
87NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]101260.0000.3282No
88CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]111990.0000.2992No
89ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]116980.0000.2857No
90IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]119930.0000.2777No
91PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]121990.0000.2722No
92TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]127280.0000.2579No
93GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]130120.0000.2502No
94ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]134640.0000.2380No
95SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]138830.0000.2267No
96TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]144220.0000.2121No
97SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]160320.0000.1685No
98FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]170340.0000.1414No
99RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]170360.0000.1414No
100VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]173720.0000.1323No
101PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176760.0000.1241No
102DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]184850.0000.1022No
103BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]190600.0000.0867No
104RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]203080.0000.0529No
105INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]203200.0000.0526No
106TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]204740.0000.0485No
107KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]206160.0000.0446No
108SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]214000.0000.0234No
109C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]219280.0000.0092No
110CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]229670.000-0.0190No
111FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]236900.000-0.0385No
112LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]237750.000-0.0408No
113LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]240120.000-0.0472No
114ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]259550.000-0.0998No
115GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]268210.000-0.1232No
116AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]272930.000-0.1360No
117DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]27775-0.037-0.1488No
118STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]27865-0.046-0.1509No
119ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]28258-0.091-0.1610No
120FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]28482-0.116-0.1664No
121LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]28511-0.121-0.1665No
122TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]28691-0.142-0.1705No
123TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]28928-0.170-0.1759No
124LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]29173-0.202-0.1813No
125MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]29402-0.229-0.1862No
126REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]29600-0.252-0.1901No
127GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]29763-0.276-0.1928No
128PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]29816-0.282-0.1926No
129MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]30030-0.309-0.1966No
130ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]30238-0.335-0.2003No
131VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]30381-0.351-0.2021No
132RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]30402-0.355-0.2006No
133PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]30554-0.375-0.2025No
134ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]30789-0.409-0.2064No
135MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]31056-0.449-0.2110No
136DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]31116-0.456-0.2100No
137RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]31483-0.519-0.2169No
138EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]31683-0.556-0.2191No
139MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]32066-0.624-0.2258No
140CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]32091-0.630-0.2228No
141ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]32355-0.683-0.2260No
142FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]32413-0.696-0.2235No
143NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]33141-0.870-0.2381No
144RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]33196-0.885-0.2345No
145SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]33221-0.892-0.2299No
146RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]33227-0.894-0.2249No
147KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33714-1.040-0.2320No
148TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]33757-1.049-0.2271No
149QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]34110-1.166-0.2299No
150TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]34273-1.223-0.2272No
151ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]34295-1.231-0.2206No
152PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]34488-1.307-0.2182No
153ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]34611-1.360-0.2137No
154DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]34816-1.442-0.2108No
155DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]35242-1.642-0.2128No
156MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]35365-1.707-0.2062No
157ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]35503-1.776-0.1997No
158H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]35513-1.779-0.1896No
159ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]35524-1.788-0.1795No
160NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]35553-1.808-0.1698No
161CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]35639-1.866-0.1613No
162CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]35667-1.881-0.1511No
163RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]35786-1.963-0.1429No
164HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]36047-2.173-0.1374No
165AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]36085-2.208-0.1256No
166CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]36138-2.257-0.1139No
167VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]36366-2.473-0.1057No
168TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36697-2.942-0.0976No
169TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36881-3.395-0.0829No
170RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36948-3.663-0.0635No
171TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36959-3.705-0.0423No
172REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]37003-3.896-0.0209No
173KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]37025-4.0030.0018No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN