Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.greenbergcls.cls #KO_GAQ_versus_KO_NA.greenbergcls.cls #KO_GAQ_versus_KO_NA_repos |
| Phenotype | greenbergcls.cls#KO_GAQ_versus_KO_NA_repos |
| Upregulated in class | KO_GAQ |
| GeneSet | HALLMARK_ANGIOGENESIS |
| Enrichment Score (ES) | 0.5785241 |
| Normalized Enrichment Score (NES) | 1.2561313 |
| Nominal p-value | 0.10236221 |
| FDR q-value | 0.09902672 |
| FWER p-Value | 0.272 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | SPP1 | secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11255] | 152 | 3.140 | 0.1484 | Yes |
| 2 | ITGAV | integrin subunit alpha V [Source:HGNC Symbol;Acc:HGNC:6150] | 200 | 2.912 | 0.2886 | Yes |
| 3 | PDGFA | platelet derived growth factor subunit A [Source:HGNC Symbol;Acc:HGNC:8799] | 292 | 2.541 | 0.4095 | Yes |
| 4 | TIMP1 | TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820] | 819 | 1.576 | 0.4719 | Yes |
| 5 | CCND2 | cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583] | 947 | 1.457 | 0.5393 | Yes |
| 6 | LPL | lipoprotein lipase [Source:HGNC Symbol;Acc:HGNC:6677] | 1494 | 1.111 | 0.5785 | Yes |
| 7 | PTK2 | protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611] | 5214 | 0.201 | 0.4879 | No |
| 8 | SLCO2A1 | solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955] | 5610 | 0.145 | 0.4843 | No |
| 9 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | 6217 | 0.065 | 0.4711 | No |
| 10 | APOH | apolipoprotein H [Source:HGNC Symbol;Acc:HGNC:616] | 7155 | 0.000 | 0.4458 | No |
| 11 | FGFR1 | fibroblast growth factor receptor 1 [Source:HGNC Symbol;Acc:HGNC:3688] | 7485 | 0.000 | 0.4369 | No |
| 12 | TNFRSF21 | TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469] | 9520 | 0.000 | 0.3821 | No |
| 13 | KCNJ8 | potassium inwardly rectifying channel subfamily J member 8 [Source:HGNC Symbol;Acc:HGNC:6269] | 10106 | 0.000 | 0.3663 | No |
| 14 | POSTN | periostin [Source:HGNC Symbol;Acc:HGNC:16953] | 10514 | 0.000 | 0.3553 | No |
| 15 | PRG2 | proteoglycan 2, pro eosinophil major basic protein [Source:HGNC Symbol;Acc:HGNC:9362] | 11747 | 0.000 | 0.3220 | No |
| 16 | MSX1 | msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391] | 12712 | 0.000 | 0.2960 | No |
| 17 | VTN | vitronectin [Source:HGNC Symbol;Acc:HGNC:12724] | 13462 | 0.000 | 0.2758 | No |
| 18 | OLR1 | oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133] | 16800 | 0.000 | 0.1858 | No |
| 19 | SERPINA5 | serpin family A member 5 [Source:HGNC Symbol;Acc:HGNC:8723] | 17824 | 0.000 | 0.1581 | No |
| 20 | LUM | lumican [Source:HGNC Symbol;Acc:HGNC:6724] | 18759 | 0.000 | 0.1329 | No |
| 21 | CXCL6 | C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643] | 19419 | 0.000 | 0.1152 | No |
| 22 | COL3A1 | collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201] | 19604 | 0.000 | 0.1102 | No |
| 23 | PF4 | platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861] | 19965 | 0.000 | 0.1005 | No |
| 24 | COL5A2 | collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210] | 20328 | 0.000 | 0.0907 | No |
| 25 | PGLYRP1 | peptidoglycan recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:8904] | 20805 | 0.000 | 0.0779 | No |
| 26 | FSTL1 | follistatin like 1 [Source:HGNC Symbol;Acc:HGNC:3972] | 21370 | 0.000 | 0.0626 | No |
| 27 | STC1 | stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373] | 28009 | -0.063 | -0.1134 | No |
| 28 | VAV2 | vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658] | 28699 | -0.143 | -0.1251 | No |
| 29 | LRPAP1 | LDL receptor related protein associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6701] | 29242 | -0.210 | -0.1295 | No |
| 30 | APP | amyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620] | 29449 | -0.235 | -0.1237 | No |
| 31 | VEGFA | vascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680] | 30198 | -0.330 | -0.1278 | No |
| 32 | S100A4 | S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494] | 31611 | -0.540 | -0.1397 | No |
| 33 | VCAN | versican [Source:HGNC Symbol;Acc:HGNC:2464] | 31925 | -0.594 | -0.1193 | No |
| 34 | JAG1 | jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188] | 33543 | -0.980 | -0.1153 | No |
| 35 | JAG2 | jagged canonical Notch ligand 2 [Source:HGNC Symbol;Acc:HGNC:6189] | 34535 | -1.327 | -0.0776 | No |
| 36 | NRP1 | neuropilin 1 [Source:HGNC Symbol;Acc:HGNC:8004] | 36732 | -3.016 | 0.0097 | No |
