Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_GAQ_versus_KO_NA.greenbergcls.cls
#KO_GAQ_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.4009556
Normalized Enrichment Score (NES)1.077219
Nominal p-value0.18627451
FDR q-value0.33028263
FWER p-Value0.749
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]04.9900.0280Yes
2TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]394.2370.0507Yes
3GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]484.1670.0739Yes
4BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]534.1010.0967Yes
5IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]574.0350.1193Yes
6IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]1143.4360.1370Yes
7SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1303.3120.1552Yes
8GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1653.0810.1716Yes
9SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2122.8710.1864Yes
10CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]2182.8170.2021Yes
11ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]2772.5970.2151Yes
12CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2852.5740.2293Yes
13SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]2862.5730.2437Yes
14PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]3502.3960.2555Yes
15GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]3952.2800.2670Yes
16BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]4362.1770.2782Yes
17EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]4672.1080.2892Yes
18SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]5302.0030.2987Yes
19CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]5351.9910.3098Yes
20ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]5621.9500.3200Yes
21ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]5821.9160.3302Yes
22IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]5871.9040.3408Yes
23MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]7491.6550.3457Yes
24TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]8191.5760.3527Yes
25ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]9131.4930.3585Yes
26CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]9471.4570.3658Yes
27DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]9921.4190.3726Yes
28SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]10621.3660.3784Yes
29CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]11021.3290.3848Yes
30PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]14931.1120.3805Yes
31TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]15931.0670.3838Yes
32PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]18450.9460.3823Yes
33HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]20340.8800.3821Yes
34TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]20920.8590.3854Yes
35ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]21040.8550.3899Yes
36CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]21720.8280.3927Yes
37DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]21890.8230.3969Yes
38TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]26780.6710.3874Yes
39CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]26910.6680.3909Yes
40BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]26970.6650.3944Yes
41JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]27060.6640.3980Yes
42XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]28640.6260.3972Yes
43BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]29290.6040.3989Yes
44FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]30130.5860.3999Yes
45CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]30940.5740.4010Yes
46ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]32550.5380.3996No
47TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]36410.4650.3918No
48GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]38270.4330.3892No
49IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]40840.3830.3845No
50CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]41210.3740.3856No
51LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]42630.3500.3837No
52DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]46040.2960.3762No
53DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]47890.2660.3727No
54GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]48970.2470.3712No
55HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]51960.2040.3642No
56PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]52140.2010.3649No
57MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]56240.1420.3546No
58CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]61800.0710.3400No
59GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]62690.0590.3379No
60BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]76780.0000.2998No
61CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]78730.0000.2946No
62PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]79610.0000.2922No
63FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]94350.0000.2523No
64GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]97670.0000.2434No
65PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]101840.0000.2321No
66PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]117210.0000.1905No
67EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]117290.0000.1903No
68IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]120050.0000.1829No
69ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]122230.0000.1770No
70TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]126440.0000.1656No
71IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]139700.0000.1297No
72BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]156740.0000.0836No
73CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]158580.0000.0787No
74DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]161180.0000.0717No
75F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]162350.0000.0685No
76F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]165660.0000.0596No
77AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]167000.0000.0560No
78TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171940.0000.0426No
79DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]181350.0000.0172No
80LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]187590.0000.0003No
81AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]199090.000-0.0308No
82FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]202370.000-0.0397No
83IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]204750.000-0.0461No
84SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]215670.000-0.0756No
85KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]220000.000-0.0873No
86CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]230270.000-0.1151No
87CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]231040.000-0.1172No
88IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]247650.000-0.1621No
89PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]256920.000-0.1872No
90CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]268130.000-0.2175No
91TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]274990.000-0.2361No
92BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]27655-0.021-0.2401No
93NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27920-0.054-0.2470No
94VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28125-0.075-0.2521No
95DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]28219-0.086-0.2541No
96EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]28335-0.100-0.2567No
97PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]28543-0.124-0.2616No
98NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]28773-0.152-0.2669No
99LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]29021-0.183-0.2726No
100SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29209-0.205-0.2765No
101MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]29392-0.227-0.2802No
102APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]29449-0.235-0.2804No
103PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]29552-0.246-0.2817No
104BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]29618-0.256-0.2821No
105BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]29640-0.258-0.2812No
106IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]29945-0.300-0.2877No
107CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]30155-0.324-0.2916No
108HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]30250-0.337-0.2922No
109RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]30435-0.359-0.2952No
110BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]30492-0.365-0.2947No
111BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]30642-0.387-0.2965No
112CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]30710-0.397-0.2961No
113IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31046-0.447-0.3027No
114RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]31086-0.452-0.3012No
115DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]31299-0.485-0.3042No
116PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]31333-0.491-0.3024No
117ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]31436-0.511-0.3023No
118RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]31483-0.519-0.3006No
119CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]32093-0.631-0.3136No
120PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]32514-0.716-0.3209No
121SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]32570-0.728-0.3183No
122RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]32597-0.734-0.3149No
123PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]33157-0.873-0.3251No
124BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]33251-0.902-0.3226No
125BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]33536-0.979-0.3248No
126SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]33659-1.018-0.3224No
127HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]33703-1.035-0.3178No
128DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]33865-1.085-0.3160No
129CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]33897-1.093-0.3108No
130ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]34201-1.198-0.3122No
131CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]34275-1.224-0.3074No
132MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]34400-1.268-0.3036No
133DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]34532-1.326-0.2997No
134CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]34821-1.443-0.2994No
135CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]35055-1.541-0.2971No
136CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]35058-1.543-0.2885No
137PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35105-1.567-0.2810No
138LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]35131-1.577-0.2728No
139RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35234-1.637-0.2664No
140CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]35251-1.646-0.2576No
141FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]35401-1.726-0.2519No
142CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35470-1.760-0.2439No
143TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]35512-1.779-0.2350No
144EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35655-1.877-0.2284No
145TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35971-2.105-0.2251No
146CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35972-2.105-0.2133No
147RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]36183-2.302-0.2061No
148ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36189-2.307-0.1933No
149GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]36287-2.393-0.1825No
150GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]36364-2.473-0.1707No
151TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36389-2.502-0.1573No
152CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36483-2.621-0.1451No
153BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]36503-2.649-0.1308No
154WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36533-2.702-0.1164No
155GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36669-2.887-0.1039No
156GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36767-3.101-0.0891No
157BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36817-3.243-0.0723No
158BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36824-3.259-0.0541No
159H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36825-3.262-0.0359No
160BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36947-3.655-0.0186No
161PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]37027-4.0100.0017No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS