Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_GAQ_versus_KO_NA.greenbergcls.cls
#KO_GAQ_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.7541597
Normalized Enrichment Score (NES)1.9306881
Nominal p-value0.0
FDR q-value0.0018370074
FWER p-Value0.001
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]344.3370.0324Yes
2IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]633.9760.0622Yes
3DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]1213.3650.0865Yes
4OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]1433.2060.1106Yes
5IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]1543.1300.1343Yes
6PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]1683.0710.1576Yes
7IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]1733.0470.1809Yes
8IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]1773.0330.2041Yes
9PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]1783.0310.2274Yes
10EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]1813.0250.2506Yes
11OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]1843.0120.2737Yes
12TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]1853.0110.2968Yes
13HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]2112.8720.3182Yes
14SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]2142.8490.3400Yes
15HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]2342.7450.3606Yes
16DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]2352.7440.3817Yes
17SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]2582.6660.4016Yes
18ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]2772.5970.4210Yes
19TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]3252.4500.4386Yes
20MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]3912.2930.4544Yes
21CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]4212.2190.4707Yes
22RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]4352.1770.4871Yes
23STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]4462.1470.5033Yes
24ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]4822.0800.5183Yes
25LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]5062.0360.5334Yes
26PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]5092.0330.5489Yes
27IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]5871.9040.5615Yes
28RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]5951.8830.5757Yes
29EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]6131.8550.5895Yes
30IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]6611.7740.6019Yes
31IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]6841.7370.6147Yes
32GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]9001.5030.6204Yes
33UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]9541.4530.6301Yes
34PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]9811.4310.6404Yes
35PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]10191.3990.6502Yes
36CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]11021.3290.6581Yes
37TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]11061.3240.6682Yes
38GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]11691.2860.6764Yes
39PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]11871.2670.6857Yes
40IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]12011.2550.6950Yes
41CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]12411.2290.7034Yes
42UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]13751.1690.7088Yes
43CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]14091.1540.7168Yes
44OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]14371.1390.7248Yes
45TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]14451.1350.7333Yes
46MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]15631.0810.7385Yes
47PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]15751.0750.7464Yes
48TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]15931.0670.7542Yes
49CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]20560.8710.7484No
50TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]23590.7670.7461No
51PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]26610.6740.7431No
52WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]26800.6710.7478No
53TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]30410.5810.7425No
54ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]40020.3970.7196No
55CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]41210.3740.7193No
56PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]41730.3660.7207No
57HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]43320.3400.7191No
58BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]43710.3330.7206No
59RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]44070.3270.7222No
60TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]44850.3150.7225No
61IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]46780.2820.7195No
62CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]47530.2710.7196No
63TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]49120.2460.7172No
64IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]55710.1500.7006No
65NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]55740.1490.7017No
66SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]74800.0000.6502No
67CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]90230.0000.6085No
68LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]94800.0000.5962No
69RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]107700.0000.5613No
70IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]117220.0000.5356No
71BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]126740.0000.5099No
72IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]140350.0000.4731No
73CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189060.0000.3415No
74IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]237190.0000.2114No
75LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]245660.0000.1885No
76SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]27681-0.0240.1046No
77TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]27683-0.0240.1047No
78IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]28206-0.0850.0912No
79B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]28290-0.0950.0897No
80PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]29170-0.2020.0675No
81LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]29418-0.2310.0626No
82PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]29970-0.3030.0501No
83C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]30851-0.4200.0295No
84IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31046-0.4470.0277No
85IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]31061-0.4490.0308No
86NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]32037-0.6160.0091No
87IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]32922-0.814-0.0085No
88LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]33131-0.866-0.0075No
89IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]33265-0.907-0.0041No
90SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]33357-0.9280.0006No
91MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]33398-0.9410.0067No
92NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]33541-0.9800.0104No
93ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]34459-1.297-0.0044No
94CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]35245-1.643-0.0130No
95CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]35851-2.009-0.0139No
96TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36389-2.502-0.0092No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36949-3.6650.0038No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE