Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_GAQ_versus_KO_NA.greenbergcls.cls
#KO_GAQ_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.5663337
Normalized Enrichment Score (NES)1.3114307
Nominal p-value0.06349207
FDR q-value0.07277722
FWER p-Value0.171
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]244.4870.0660Yes
2FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]354.3220.1298Yes
3ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]713.8700.1864Yes
4JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1093.4670.2368Yes
5SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1303.3120.2855Yes
6SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]1503.1520.3317Yes
7PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]1583.1090.3777Yes
8ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]2692.6250.4137Yes
9SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]4022.2720.4439Yes
10TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]4252.2080.4761Yes
11SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]5302.0030.5030Yes
12RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]7911.6040.5198Yes
13UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]11391.3020.5297Yes
14BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]13641.1740.5411Yes
15TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]14871.1170.5544Yes
16WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]26140.6870.5342Yes
17XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]28640.6260.5368Yes
18THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]28790.6220.5456Yes
19HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]29220.6070.5535Yes
20SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]29480.6010.5617Yes
21CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]30940.5740.5663Yes
22SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]35290.4850.5618No
23PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]42160.3580.5486No
24NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]43670.3340.5495No
25BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]44740.3170.5514No
26CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]52060.2020.5346No
27APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]54800.1620.5297No
28FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]57520.1250.5242No
29CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]97370.0000.4166No
30CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]128220.0000.3333No
31TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]136300.0000.3116No
32NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]193210.0000.1579No
33LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]202060.0000.1341No
34IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]204770.0000.1268No
35ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]28071-0.069-0.0772No
36ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]28359-0.103-0.0834No
37PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]28792-0.154-0.0928No
38MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28898-0.167-0.0932No
39FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]29376-0.225-0.1027No
40BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]30658-0.390-0.1315No
41SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]30695-0.394-0.1266No
42ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]30756-0.404-0.1223No
43PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]30875-0.423-0.1192No
44TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]31936-0.596-0.1390No
45SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]32026-0.613-0.1323No
46LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]32334-0.679-0.1305No
47RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]32643-0.745-0.1277No
48HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]33072-0.852-0.1266No
49SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]35273-1.660-0.1614No
50TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]35684-1.898-0.1443No
51SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]35963-2.099-0.1206No
52SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36803-3.212-0.0956No
53BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36817-3.243-0.0478No
54KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36962-3.7150.0035No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING