Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_LPS_versus_KO_NA.greenbergcls.cls
#KO_LPS_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetCHR2Q11
Enrichment Score (ES)0.44572598
Normalized Enrichment Score (NES)1.1688062
Nominal p-value0.06741573
FDR q-value0.4651859
FWER p-Value0.99
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR2Q11   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]274.7730.0926Yes
2SEMA4Csemaphorin 4C [Source:HGNC Symbol;Acc:HGNC:10731]1843.5100.1570Yes
3MITD1microtubule interacting and trafficking domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25207]2253.2170.2189Yes
4ARID5AAT-rich interaction domain 5A [Source:HGNC Symbol;Acc:HGNC:17361]4172.4970.2625Yes
5TMEM127transmembrane protein 127 [Source:HGNC Symbol;Acc:HGNC:26038]9131.6360.2811Yes
6RNF149ring finger protein 149 [Source:HGNC Symbol;Acc:HGNC:23137]9281.6250.3125Yes
7ITPRIPL1ITPRIP like 1 [Source:HGNC Symbol;Acc:HGNC:29371]10181.5230.3399Yes
8TXNDC9thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24110]10931.4350.3660Yes
9ZNF2zinc finger protein 2 [Source:HGNC Symbol;Acc:HGNC:12991]17980.9790.3661Yes
10EIF5Beukaryotic translation initiation factor 5B [Source:HGNC Symbol;Acc:HGNC:30793]19370.9260.3805Yes
11COA5cytochrome c oxidase assembly factor 5 [Source:HGNC Symbol;Acc:HGNC:33848]20580.8770.3944Yes
12CIAO1cytosolic iron-sulfur assembly component 1 [Source:HGNC Symbol;Acc:HGNC:14280]21830.8240.4071Yes
13MGAT4Aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [Source:HGNC Symbol;Acc:HGNC:7047]22150.8100.4221Yes
14CRACDLCRACD like [Source:HGNC Symbol;Acc:HGNC:33454]24950.7140.4285Yes
15BBIP1P1BBSome interacting protein 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:52781]29460.5770.4276Yes
16CNOT11CCR4-NOT transcription complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:25217]29710.5730.4382Yes
17TMEM131transmembrane protein 131 [Source:HGNC Symbol;Acc:HGNC:30366]35170.4500.4322Yes
18SNORD89small nucleolar RNA, C/D box 89 [Source:HGNC Symbol;Acc:HGNC:32750]35960.4340.4386Yes
19UNC50unc-50 inner nuclear membrane RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16046]36410.4240.4457Yes
20ASTLastacin like metalloendopeptidase [Source:HGNC Symbol;Acc:HGNC:31704]45360.2560.4266No
21YWHAQP5YWHAQ pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:37684]46050.2460.4295No
22ANKRD23ankyrin repeat domain 23 [Source:HGNC Symbol;Acc:HGNC:24470]49370.1920.4243No
23ATP5F1BP1ATP synthase F1 subunit beta pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:831]49490.1910.4278No
24KANSL3KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]50150.1820.4295No
25MRPL30mitochondrial ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:14036]54320.1180.4206No
26SNX18P14sorting nexin 18 pseudogene 14 [Source:HGNC Symbol;Acc:HGNC:39622]57140.0760.4145No
27PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]60050.0330.4073No
28LONRF2LON peptidase N-terminal domain and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:24788]70040.0000.3803No
29AC013270.1novel transcript70810.0000.3782No
30ANKRD36ankyrin repeat domain 36 [Source:HGNC Symbol;Acc:HGNC:24079]75060.0000.3667No
31PROM2prominin 2 [Source:HGNC Symbol;Acc:HGNC:20685]80870.0000.3510No
32OR7E102Polfactory receptor family 7 subfamily E member 102 pseudogene [Source:HGNC Symbol;Acc:HGNC:15043]81580.0000.3491No
33TBC1D8-AS1TBC1D8 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:52782]85630.0000.3382No
34LINC01104long intergenic non-protein coding RNA 1104 [Source:HGNC Symbol;Acc:HGNC:49226]86930.0000.3347No
35IGKV3OR2-5immunoglobulin kappa variable 3/OR2-5 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5832]88960.0000.3293No
36FER1L5fer-1 like family member 5 [Source:HGNC Symbol;Acc:HGNC:19044]91150.0000.3234No
37LYG1lysozyme g1 [Source:HGNC Symbol;Acc:HGNC:27014]91870.0000.3214No
38LYG2lysozyme g2 [Source:HGNC Symbol;Acc:HGNC:29615]91880.0000.3214No
39TRIM43CPtripartite motif containing 43C, pseudogene [Source:HGNC Symbol;Acc:HGNC:43981]94280.0000.3150No
40IGKV1OR2-6immunoglobulin kappa variable 1/OR2-6 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5770]97780.0000.3055No
41IGKV1OR2-9immunoglobulin kappa variable 1/OR2-9 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5771]97810.0000.3055No
42IGKV1OR2-3immunoglobulin kappa variable 1/OR2-3 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5769]97880.0000.3053No
43FAHD2Bfumarylacetoacetate hydrolase domain containing 2B [Source:HGNC Symbol;Acc:HGNC:25318]102160.0000.2938No
44FAM178Bfamily with sequence similarity 178 member B [Source:HGNC Symbol;Acc:HGNC:28036]103780.0000.2894No
45FABP7P2fatty acid binding protein 7 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:41952]107450.0000.2795No
46ANKRD20A8Pankyrin repeat domain 20 family member A8, pseudogene [Source:HGNC Symbol;Acc:HGNC:23666]108400.0000.2770No
47RNU4-84PRNA, U4 small nuclear 84, pseudogene [Source:HGNC Symbol;Acc:HGNC:47020]110140.0000.2723No
48RNU6-1320PRNA, U6 small nuclear 1320, pseudogene [Source:HGNC Symbol;Acc:HGNC:48283]113380.0000.2635No
49SLC2AXP1solute carrier family 2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:31077]114300.0000.2611No
50AFF3AF4/FMR2 family member 3 [Source:HGNC Symbol;Acc:HGNC:6473]114550.0000.2604No
51LINC00342long intergenic non-protein coding RNA 342 [Source:HGNC Symbol;Acc:HGNC:42470]129450.0000.2201No
52MTCO1P48MT-CO1 pseudogene 48 [Source:HGNC Symbol;Acc:HGNC:52113]130540.0000.2172No
53MTCO3P45MT-CO3 pseudogene 45 [Source:HGNC Symbol;Acc:HGNC:52148]140000.0000.1917No
54RFX8RFX family member 8, lacking RFX DNA binding domain [Source:HGNC Symbol;Acc:HGNC:37253]142880.0000.1839No
55RNU7-46PRNA, U7 small nuclear 46 pseudogene [Source:HGNC Symbol;Acc:HGNC:34142]147530.0000.1713No
56TRIM43tripartite motif containing 43 [Source:HGNC Symbol;Acc:HGNC:19015]152090.0000.1590No
57MIR5696microRNA 5696 [Source:HGNC Symbol;Acc:HGNC:43516]152760.0000.1572No
58CNN2P8calponin 2 pseudogene 8 [Source:HGNC Symbol;Acc:HGNC:39533]153460.0000.1554No
59RN7SL575PRNA, 7SL, cytoplasmic 575, pseudogene [Source:HGNC Symbol;Acc:HGNC:46591]157240.0000.1452No
60IL1R1interleukin 1 receptor type 1 [Source:HGNC Symbol;Acc:HGNC:5993]158490.0000.1418No
61IL1R2interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]158500.0000.1418No
62ZAP70zeta chain of T cell receptor associated protein kinase 70 [Source:HGNC Symbol;Acc:HGNC:12858]159810.0000.1383No
63RN7SL313PRNA, 7SL, cytoplasmic 313, pseudogene [Source:HGNC Symbol;Acc:HGNC:46329]162710.0000.1305No
64ADRA2Badrenoceptor alpha 2B [Source:HGNC Symbol;Acc:HGNC:282]164680.0000.1252No
65AC097374.1pseudogene similar to part of asparagine synthetase (ASNS)171320.0000.1072No
66AL845331.1putative aquaporin-7-like protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:100509620]176280.0000.0938No
67ANKRD36Cankyrin repeat domain 36C [Source:HGNC Symbol;Acc:HGNC:32946]177640.0000.0902No
68ANKRD36Bankyrin repeat domain 36B [Source:HGNC Symbol;Acc:HGNC:29333]177700.0000.0901No
69STARD7-AS1STARD7 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40827]181610.0000.0795No
70IGKV1OR2-11immunoglobulin kappa variable 1/OR2-11 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5768]183170.0000.0753No
71IGKV2OR2-7Dimmunoglobulin kappa variable 2/OR2-7D (pseudogene) [Source:HGNC Symbol;Acc:HGNC:37489]184360.0000.0721No
72IGKV2OR2-10immunoglobulin kappa variable 2/OR2-10 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5806]184830.0000.0709No
73MALmal, T cell differentiation protein [Source:HGNC Symbol;Acc:HGNC:6817]187980.0000.0624No
74RNA5SP101RNA, 5S ribosomal pseudogene 101 [Source:HGNC Symbol;Acc:HGNC:42899]189120.0000.0593No
75NMSneuromedin S [Source:HGNC Symbol;Acc:HGNC:32203]192180.0000.0511No
76NANOGNBP1NANOGNB pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42158]192850.0000.0493No
77LINC01870long intergenic non-protein coding RNA 1870 [Source:HGNC Symbol;Acc:HGNC:52689]193950.0000.0463No
78LINC01868long intergenic non-protein coding RNA 1868 [Source:HGNC Symbol;Acc:HGNC:52688]194020.0000.0462No
79LINC01849long intergenic non-protein coding RNA 1849 [Source:HGNC Symbol;Acc:HGNC:52665]195020.0000.0435No
80TEKT4tektin 4 [Source:HGNC Symbol;Acc:HGNC:31012]196890.0000.0385No
81GPAT2P2glycerol-3-phosphate acyltransferase 2 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:52331]198790.0000.0333No
82GPAT2P1glycerol-3-phosphate acyltransferase 2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:52330]198830.0000.0333No
83RNU7-96PRNA, U7 small nuclear 96 pseudogene [Source:HGNC Symbol;Acc:HGNC:45630]207210.0000.0106No
84MIR3127microRNA 3127 [Source:HGNC Symbol;Acc:HGNC:38269]208640.0000.0068No
85RNU4-8PRNA, U4 small nuclear 8, pseudogene [Source:HGNC Symbol;Acc:HGNC:10195]210780.0000.0010No
86VWA3Bvon Willebrand factor A domain containing 3B [Source:HGNC Symbol;Acc:HGNC:28385]211720.000-0.0015No
87C2orf92chromosome 2 open reading frame 92 [Source:HGNC Symbol;Acc:HGNC:49272]212260.000-0.0029No
88C2orf15chromosome 2 open reading frame 15 [Source:HGNC Symbol;Acc:HGNC:28436]213510.000-0.0063No
89TRIM64FPtripartite motif containing 64F, pseudogene [Source:HGNC Symbol;Acc:HGNC:43976]214700.000-0.0095No
90ZNF514zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]216730.000-0.0149No
91CYP4F32Pcytochrome P450 family 4 subfamily F member 32, pseudogene [Source:HGNC Symbol;Acc:HGNC:39951]226190.000-0.0405No
92CREG2cellular repressor of E1A stimulated genes 2 [Source:HGNC Symbol;Acc:HGNC:14272]228670.000-0.0472No
93KCNIP3potassium voltage-gated channel interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:15523]235960.000-0.0669No
94UBTFL3UBTF like 3 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35402]236880.000-0.0694No
95UBTFL6UBTF like 6 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35406]236910.000-0.0694No
96UBTFL5UBTF like 5 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35405]236920.000-0.0694No
97RN7SL210PRNA, 7SL, cytoplasmic 210, pseudogene [Source:HGNC Symbol;Acc:HGNC:46226]237490.000-0.0709No
98HMGN1P36high mobility group nucleosome binding domain 1 pseudogene 36 [Source:HGNC Symbol;Acc:HGNC:39380]247220.000-0.0972No
99TRIM43Btripartite motif containing 43B [Source:HGNC Symbol;Acc:HGNC:37146]247420.000-0.0977No
100GPAT2glycerol-3-phosphate acyltransferase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:27168]250590.000-0.1063No
101TRIM51JPtripartite motif-containing 51J, pseudogene [Source:HGNC Symbol;Acc:HGNC:43978]257050.000-0.1237No
102CNN2P11calponin 2 pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:39536]265380.000-0.1463No
103IGKV2OR2-2immunoglobulin kappa variable 2/OR2-2 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5808]266030.000-0.1480No
104IGKV2OR2-1immunoglobulin kappa variable 2/OR2-1 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5805]266050.000-0.1480No
105IGKV2OR2-8immunoglobulin kappa variable 2/OR2-8 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5811]266170.000-0.1483No
106IGKV2OR2-7immunoglobulin kappa variable 2/OR2-7 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5810]266180.000-0.1483No
107RPS24P6ribosomal protein S24 pseudogene 6 [Source:HGNC Symbol;Acc:HGNC:36240]27148-0.001-0.1626No
108CNGA3cyclic nucleotide gated channel subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:2150]28187-0.140-0.1880No
109ACTR1Bactin related protein 1B [Source:HGNC Symbol;Acc:HGNC:168]28420-0.170-0.1909No
110NPAS2neuronal PAS domain protein 2 [Source:HGNC Symbol;Acc:HGNC:7895]29373-0.298-0.2108No
111MRPS5mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498]29405-0.302-0.2058No
112LMAN2Llectin, mannose binding 2 like [Source:HGNC Symbol;Acc:HGNC:19263]29486-0.311-0.2019No
113HMGN2P22high mobility group nucleosomal binding domain 2 pseudogene 22 [Source:HGNC Symbol;Acc:HGNC:39387]29813-0.354-0.2037No
114NEURL3neuralized E3 ubiquitin protein ligase 3 [Source:HGNC Symbol;Acc:HGNC:25162]31051-0.539-0.2267No
115COX5Bcytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]31077-0.544-0.2167No
116FAHD2Afumarylacetoacetate hydrolase domain containing 2A [Source:HGNC Symbol;Acc:HGNC:24252]31327-0.583-0.2120No
117SNRNP200small nuclear ribonucleoprotein U5 subunit 200 [Source:HGNC Symbol;Acc:HGNC:30859]31613-0.639-0.2073No
118MAP4K4mitogen-activated protein kinase kinase kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6866]31631-0.643-0.1951No
119CNNM4cyclin and CBS domain divalent metal cation transport mediator 4 [Source:HGNC Symbol;Acc:HGNC:105]31651-0.645-0.1830No
120TSGA10testis specific 10 [Source:HGNC Symbol;Acc:HGNC:14927]31675-0.651-0.1709No
121RPL31ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]31735-0.663-0.1596No
122REV1REV1 DNA directed polymerase [Source:HGNC Symbol;Acc:HGNC:14060]32309-0.800-0.1594No
123CHST10carbohydrate sulfotransferase 10 [Source:HGNC Symbol;Acc:HGNC:19650]32416-0.829-0.1461No
124FAHD2CPfumarylacetoacetate hydrolase domain containing 2C, pseudogene [Source:HGNC Symbol;Acc:HGNC:44135]32792-0.925-0.1381No
125INPP4Ainositol polyphosphate-4-phosphatase type I A [Source:HGNC Symbol;Acc:HGNC:6074]33325-1.086-0.1313No
126LIPT1lipoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:29569]34422-1.481-0.1320No
127CNNM3cyclin and CBS domain divalent metal cation transport mediator 3 [Source:HGNC Symbol;Acc:HGNC:104]34665-1.580-0.1076No
128STARD7StAR related lipid transfer domain containing 7 [Source:HGNC Symbol;Acc:HGNC:18063]34873-1.676-0.0805No
129ANKRD39ankyrin repeat domain 39 [Source:HGNC Symbol;Acc:HGNC:28640]34882-1.682-0.0478No
130TBC1D8TBC1 domain family member 8 [Source:HGNC Symbol;Acc:HGNC:17791]35618-2.132-0.0260No
131NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36693-3.3640.0107No
Table: GSEA details [plain text format]



Fig 2: CHR2Q11   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR2Q11: Random ES distribution   
Gene set null distribution of ES for CHR2Q11