Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.greenbergcls.cls #KO_LPS_versus_KO_NA.greenbergcls.cls #KO_LPS_versus_KO_NA_repos |
| Phenotype | greenbergcls.cls#KO_LPS_versus_KO_NA_repos |
| Upregulated in class | KO_LPS |
| GeneSet | LIANG_SILENCED_BY_METHYLATION_2 |
| Enrichment Score (ES) | 0.87650454 |
| Normalized Enrichment Score (NES) | 2.0969055 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0 |
| FWER p-Value | 0.0 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | CCL5 | C-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10632] | 4 | 4.991 | 0.0666 | Yes |
| 2 | PTGS2 | prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605] | 6 | 4.961 | 0.1330 | Yes |
| 3 | IFIT2 | interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409] | 15 | 4.880 | 0.1980 | Yes |
| 4 | IFIT1 | interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407] | 18 | 4.859 | 0.2629 | Yes |
| 5 | MX1 | MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532] | 28 | 4.772 | 0.3265 | Yes |
| 6 | MX2 | MX dynamin like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:7533] | 31 | 4.760 | 0.3901 | Yes |
| 7 | IRF7 | interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122] | 49 | 4.561 | 0.4507 | Yes |
| 8 | IFI44 | interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938] | 53 | 4.513 | 0.5109 | Yes |
| 9 | STAT1 | signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362] | 134 | 3.807 | 0.5597 | Yes |
| 10 | OAS1 | 2'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086] | 142 | 3.728 | 0.6094 | Yes |
| 11 | TNFAIP3 | TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896] | 156 | 3.677 | 0.6582 | Yes |
| 12 | SOD2 | superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180] | 204 | 3.345 | 0.7016 | Yes |
| 13 | OAS2 | 2'-5'-oligoadenylate synthetase 2 [Source:HGNC Symbol;Acc:HGNC:8087] | 215 | 3.271 | 0.7451 | Yes |
| 14 | SERPINB2 | serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584] | 270 | 3.014 | 0.7840 | Yes |
| 15 | SAA1 | serum amyloid A1 [Source:HGNC Symbol;Acc:HGNC:10513] | 283 | 2.959 | 0.8232 | Yes |
| 16 | HBEGF | heparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059] | 1460 | 1.167 | 0.8071 | Yes |
| 17 | IFIT3 | interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411] | 1533 | 1.127 | 0.8202 | Yes |
| 18 | IL13RA2 | interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975] | 1665 | 1.051 | 0.8307 | Yes |
| 19 | IL6 | interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018] | 1761 | 0.996 | 0.8415 | Yes |
| 20 | C3 | complement C3 [Source:HGNC Symbol;Acc:HGNC:1318] | 2025 | 0.892 | 0.8463 | Yes |
| 21 | STX3 | syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438] | 2050 | 0.880 | 0.8574 | Yes |
| 22 | INHBA | inhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066] | 2146 | 0.838 | 0.8661 | Yes |
| 23 | CXCL2 | C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603] | 2170 | 0.828 | 0.8765 | Yes |
| 24 | IFI44L | interferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817] | 4225 | 0.313 | 0.8252 | No |
| 25 | UCHL1 | ubiquitin C-terminal hydrolase L1 [Source:HGNC Symbol;Acc:HGNC:12513] | 4293 | 0.300 | 0.8274 | No |
| 26 | DHRS2 | dehydrogenase/reductase 2 [Source:HGNC Symbol;Acc:HGNC:18349] | 4401 | 0.279 | 0.8283 | No |
| 27 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | 5528 | 0.105 | 0.7993 | No |
| 28 | CCL20 | C-C motif chemokine ligand 20 [Source:HGNC Symbol;Acc:HGNC:10619] | 6267 | 0.000 | 0.7793 | No |
| 29 | AREG | amphiregulin [Source:HGNC Symbol;Acc:HGNC:651] | 7142 | 0.000 | 0.7557 | No |
| 30 | SLPI | secretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092] | 9095 | 0.000 | 0.7030 | No |
| 31 | LCN2 | lipocalin 2 [Source:HGNC Symbol;Acc:HGNC:6526] | 10774 | 0.000 | 0.6577 | No |
| 32 | TNFSF10 | TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925] | 12386 | 0.000 | 0.6142 | No |
| 33 | BIK | BCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051] | 15529 | 0.000 | 0.5294 | No |
| 34 | H19 | H19 imprinted maternally expressed transcript [Source:HGNC Symbol;Acc:HGNC:4713] | 17070 | 0.000 | 0.4878 | No |
| 35 | ICAM1 | intercellular adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5344] | 18173 | 0.000 | 0.4580 | No |
| 36 | GAGE1 | G antigen 1 [Source:HGNC Symbol;Acc:HGNC:4098] | 18698 | 0.000 | 0.4439 | No |
| 37 | MMP1 | matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155] | 18999 | 0.000 | 0.4358 | No |
| 38 | CXCL6 | C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643] | 19329 | 0.000 | 0.4269 | No |
| 39 | CXCL5 | C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642] | 19347 | 0.000 | 0.4264 | No |
| 40 | PI3 | peptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:8947] | 19891 | 0.000 | 0.4118 | No |
| 41 | IFI6 | interferon alpha inducible protein 6 [Source:HGNC Symbol;Acc:HGNC:4054] | 20586 | 0.000 | 0.3930 | No |
| 42 | H2AC18 | H2A clustered histone 18 [Source:HGNC Symbol;Acc:HGNC:4736] | 21524 | 0.000 | 0.3677 | No |
| 43 | KRT17 | keratin 17 [Source:HGNC Symbol;Acc:HGNC:6427] | 21795 | 0.000 | 0.3604 | No |
| 44 | CTAG1B | cancer/testis antigen 1B [Source:HGNC Symbol;Acc:HGNC:2491] | 22183 | 0.000 | 0.3500 | No |
| 45 | CSF2 | colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434] | 24235 | 0.000 | 0.2946 | No |
| 46 | MAGEA12 | MAGE family member A12 [Source:HGNC Symbol;Acc:HGNC:6799] | 26177 | 0.000 | 0.2422 | No |
| 47 | MAGEA2 | MAGE family member A2 [Source:HGNC Symbol;Acc:HGNC:6800] | 26328 | 0.000 | 0.2382 | No |
| 48 | MAGEA3 | MAGE family member A3 [Source:HGNC Symbol;Acc:HGNC:6801] | 26333 | 0.000 | 0.2380 | No |
| 49 | MAGEA4 | MAGE family member A4 [Source:HGNC Symbol;Acc:HGNC:6802] | 26335 | 0.000 | 0.2380 | No |
| 50 | SSX2 | SSX family member 2 [Source:HGNC Symbol;Acc:HGNC:11336] | 26833 | 0.000 | 0.2246 | No |
| 51 | XAF1 | XIAP associated factor 1 [Source:HGNC Symbol;Acc:HGNC:30932] | 26912 | 0.000 | 0.2225 | No |
| 52 | STC1 | stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373] | 27545 | -0.063 | 0.2063 | No |
| 53 | SP100 | SP100 nuclear antigen [Source:HGNC Symbol;Acc:HGNC:11206] | 29523 | -0.315 | 0.1571 | No |
| 54 | NT5E | 5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021] | 30213 | -0.410 | 0.1440 | No |
| 55 | C1S | complement C1s [Source:HGNC Symbol;Acc:HGNC:1247] | 30281 | -0.420 | 0.1478 | No |
| 56 | S100A4 | S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494] | 31976 | -0.723 | 0.1117 | No |
| 57 | H2BC6 | H2B clustered histone 6 [Source:HGNC Symbol;Acc:HGNC:4753] | 32882 | -0.949 | 0.0999 | No |
| 58 | H2AC6 | H2A clustered histone 6 [Source:HGNC Symbol;Acc:HGNC:4733] | 33128 | -1.021 | 0.1070 | No |
