Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_LPS_versus_KO_NA.greenbergcls.cls
#KO_LPS_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetMODULE_223
Enrichment Score (ES)0.58204883
Normalized Enrichment Score (NES)1.5448545
Nominal p-value0.0
FDR q-value0.15580995
FWER p-Value0.793
Table: GSEA Results Summary



Fig 1: Enrichment plot: MODULE_223   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]14.9950.0329Yes
2LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]24.9940.0658Yes
3CSF3colony stimulating factor 3 [Source:HGNC Symbol;Acc:HGNC:2438]84.9530.0983Yes
4IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]94.9380.1309Yes
5ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]174.8600.1628Yes
6FOSL1FOS like 1, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:13718]344.7310.1935Yes
7PDGFBplatelet derived growth factor subunit B [Source:HGNC Symbol;Acc:HGNC:8800]684.3130.2210Yes
8OSMoncostatin M [Source:HGNC Symbol;Acc:HGNC:8506]694.3120.2495Yes
9EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]844.1880.2767Yes
10CD83CD83 molecule [Source:HGNC Symbol;Acc:HGNC:1703]1074.0060.3025Yes
11MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]1353.7970.3268Yes
12MTHFRmethylenetetrahydrofolate reductase [Source:HGNC Symbol;Acc:HGNC:7436]2123.2810.3464Yes
13TSPAN3tetraspanin 3 [Source:HGNC Symbol;Acc:HGNC:17752]2922.9140.3635Yes
14BCAT1branched chain amino acid transaminase 1 [Source:HGNC Symbol;Acc:HGNC:976]3652.6560.3790Yes
15TLR1toll like receptor 1 [Source:HGNC Symbol;Acc:HGNC:11847]4072.5280.3946Yes
16CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]4102.5200.4111Yes
17IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]4402.4320.4264Yes
18IL2RGinterleukin 2 receptor subunit gamma [Source:HGNC Symbol;Acc:HGNC:6010]5602.1610.4374Yes
19NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]6372.0100.4486Yes
20BTG1BTG anti-proliferation factor 1 [Source:HGNC Symbol;Acc:HGNC:1130]6541.9860.4613Yes
21CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]6981.9160.4727Yes
22PRDX1peroxiredoxin 1 [Source:HGNC Symbol;Acc:HGNC:9352]7391.8300.4837Yes
23EVI2Aecotropic viral integration site 2A [Source:HGNC Symbol;Acc:HGNC:3499]7771.7790.4944Yes
24HLA-Bmajor histocompatibility complex, class I, B [Source:HGNC Symbol;Acc:HGNC:4932]10741.4570.4960Yes
25TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]11451.3910.5033Yes
26FTH1ferritin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:3976]11571.3820.5121Yes
27HLA-Amajor histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:HGNC:4931]12941.2740.5168Yes
28NAMPTnicotinamide phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:30092]13421.2390.5237Yes
29ZEB1zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]13771.2190.5308Yes
30PDGFAplatelet derived growth factor subunit A [Source:HGNC Symbol;Acc:HGNC:8799]14121.1970.5378Yes
31HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]14601.1670.5442Yes
32BCL6BCL6 transcription repressor [Source:HGNC Symbol;Acc:HGNC:1001]15011.1440.5507Yes
33HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]15871.0940.5556Yes
34HLA-Fmajor histocompatibility complex, class I, F [Source:HGNC Symbol;Acc:HGNC:4963]16101.0820.5622Yes
35CD86CD86 molecule [Source:HGNC Symbol;Acc:HGNC:1705]16151.0800.5692Yes
36HLA-Gmajor histocompatibility complex, class I, G [Source:HGNC Symbol;Acc:HGNC:4964]17560.9990.5720Yes
37IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]17610.9960.5784Yes
38MXD1MAX dimerization protein 1 [Source:HGNC Symbol;Acc:HGNC:6761]18620.9600.5820Yes
39KCNN4potassium calcium-activated channel subfamily N member 4 [Source:HGNC Symbol;Acc:HGNC:6293]20930.8640.5815No
40PSPHP1phosphoserine phosphatase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:9578]28690.5970.5645No
41DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]31260.5340.5611No
42MDKmidkine [Source:HGNC Symbol;Acc:HGNC:6972]36390.4240.5500No
43B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]37190.4080.5506No
44DAB2DAB adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:2662]37350.4040.5528No
45KLF6Kruppel like factor 6 [Source:HGNC Symbol;Acc:HGNC:2235]37840.3970.5541No
46IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]40790.3450.5485No
47IL6Rinterleukin 6 receptor [Source:HGNC Symbol;Acc:HGNC:6019]41900.3200.5476No
48NCF4neutrophil cytosolic factor 4 [Source:HGNC Symbol;Acc:HGNC:7662]60440.0270.4976No
49CCL14C-C motif chemokine ligand 14 [Source:HGNC Symbol;Acc:HGNC:10612]62320.0000.4926No
50SELPselectin P [Source:HGNC Symbol;Acc:HGNC:10721]70080.0000.4716No
51SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]70090.0000.4716No
52AREGamphiregulin [Source:HGNC Symbol;Acc:HGNC:651]71420.0000.4680No
53PDGFRAplatelet derived growth factor receptor alpha [Source:HGNC Symbol;Acc:HGNC:8803]73610.0000.4621No
54TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]86530.0000.4272No
55LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]90130.0000.4175No
56LY86lymphocyte antigen 86 [Source:HGNC Symbol;Acc:HGNC:16837]90290.0000.4170No
57GRPRgastrin releasing peptide receptor [Source:HGNC Symbol;Acc:HGNC:4609]98690.0000.3943No
58PPBPpro-platelet basic protein [Source:HGNC Symbol;Acc:HGNC:9240]108140.0000.3688No
59EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]113400.0000.3546No
60S100BS100 calcium binding protein B [Source:HGNC Symbol;Acc:HGNC:10500]114870.0000.3506No
61ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]118340.0000.3413No
62TGFAtransforming growth factor alpha [Source:HGNC Symbol;Acc:HGNC:11765]123980.0000.3260No
63IGF2insulin like growth factor 2 [Source:HGNC Symbol;Acc:HGNC:5466]124140.0000.3256No
64BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]124150.0000.3256No
65VIPR1vasoactive intestinal peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:12694]133010.0000.3017No
66LILRA1leukocyte immunoglobulin like receptor A1 [Source:HGNC Symbol;Acc:HGNC:6602]133580.0000.3002No
67LILRB3leukocyte immunoglobulin like receptor B3 [Source:HGNC Symbol;Acc:HGNC:6607]133650.0000.3000No
68LILRB4leukocyte immunoglobulin like receptor B4 [Source:HGNC Symbol;Acc:HGNC:6608]133660.0000.3000No
69LILRB5leukocyte immunoglobulin like receptor B5 [Source:HGNC Symbol;Acc:HGNC:6609]133670.0000.3000No
70IL15RAinterleukin 15 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:5978]140650.0000.2811No
71TACSTD2tumor associated calcium signal transducer 2 [Source:HGNC Symbol;Acc:HGNC:11530]143830.0000.2725No
72CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]157110.0000.2366No
73CD4CD4 molecule [Source:HGNC Symbol;Acc:HGNC:1678]157120.0000.2366No
74HLA-DRAmajor histocompatibility complex, class II, DR alpha [Source:HGNC Symbol;Acc:HGNC:4947]161650.0000.2244No
75MST1Rmacrophage stimulating 1 receptor [Source:HGNC Symbol;Acc:HGNC:7381]162080.0000.2233No
76ADRA1Dadrenoceptor alpha 1D [Source:HGNC Symbol;Acc:HGNC:280]164580.0000.2165No
77TGFBItransforming growth factor beta induced [Source:HGNC Symbol;Acc:HGNC:11771]166240.0000.2121No
78FGAfibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]166300.0000.2119No
79FGGfibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]166310.0000.2119No
80GCGglucagon [Source:HGNC Symbol;Acc:HGNC:4191]168760.0000.2053No
81SPOCK1SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:11251]170040.0000.2019No
82HFEhomeostatic iron regulator [Source:HGNC Symbol;Acc:HGNC:4886]172770.0000.1945No
83IL3interleukin 3 [Source:HGNC Symbol;Acc:HGNC:6011]176520.0000.1844No
84CHRM3cholinergic receptor muscarinic 3 [Source:HGNC Symbol;Acc:HGNC:1952]177560.0000.1816No
85HLA-DRB5major histocompatibility complex, class II, DR beta 5 [Source:HGNC Symbol;Acc:HGNC:4953]179750.0000.1757No
86OSMRoncostatin M receptor [Source:HGNC Symbol;Acc:HGNC:8507]188980.0000.1508No
87CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]193430.0000.1387No
88CXCL5C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]193470.0000.1387No
89PTNpleiotrophin [Source:HGNC Symbol;Acc:HGNC:9630]200100.0000.1207No
90TFF3trefoil factor 3 [Source:HGNC Symbol;Acc:HGNC:11757]205790.0000.1054No
91EDNRAendothelin receptor type A [Source:HGNC Symbol;Acc:HGNC:3179]217030.0000.0750No
92CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]227600.0000.0464No
93SLAMF1signaling lymphocytic activation molecule family member 1 [Source:HGNC Symbol;Acc:HGNC:10903]227940.0000.0455No
94CD48CD48 molecule [Source:HGNC Symbol;Acc:HGNC:1683]228440.0000.0442No
95CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]229000.0000.0427No
96CD8BCD8b molecule [Source:HGNC Symbol;Acc:HGNC:1707]229110.0000.0424No
97CD8ACD8a molecule [Source:HGNC Symbol;Acc:HGNC:1706]229120.0000.0424No
98DEFA5defensin alpha 5 [Source:HGNC Symbol;Acc:HGNC:2764]232450.0000.0334No
99TPSAB1tryptase alpha/beta 1 [Source:HGNC Symbol;Acc:HGNC:12019]237920.0000.0187No
100LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]242460.0000.0064No
101FGF4fibroblast growth factor 4 [Source:HGNC Symbol;Acc:HGNC:3682]250660.000-0.0158No
102CD79ACD79a molecule [Source:HGNC Symbol;Acc:HGNC:1698]252020.000-0.0194No
103REG1Bregenerating family member 1 beta [Source:HGNC Symbol;Acc:HGNC:9952]260460.000-0.0422No
104RPS27ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]27275-0.025-0.0753No
105ENPEPglutamyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:3355]27294-0.030-0.0756No
106CSRP2cysteine and glycine rich protein 2 [Source:HGNC Symbol;Acc:HGNC:2470]27450-0.053-0.0794No
107RPS4Xribosomal protein S4 X-linked [Source:HGNC Symbol;Acc:HGNC:10424]27872-0.104-0.0901No
108CD5CD5 molecule [Source:HGNC Symbol;Acc:HGNC:1685]28156-0.134-0.0969No
109RNASE6ribonuclease A family member k6 [Source:HGNC Symbol;Acc:HGNC:10048]28638-0.199-0.1086No
110HLA-DMBmajor histocompatibility complex, class II, DM beta [Source:HGNC Symbol;Acc:HGNC:4935]28981-0.243-0.1163No
111EMP3epithelial membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:3335]29032-0.250-0.1160No
112HPhaptoglobin [Source:HGNC Symbol;Acc:HGNC:5141]29781-0.350-0.1339No
113EGFepidermal growth factor [Source:HGNC Symbol;Acc:HGNC:3229]30014-0.381-0.1377No
114FGBfibrinogen beta chain [Source:HGNC Symbol;Acc:HGNC:3662]30275-0.419-0.1420No
115GRNgranulin precursor [Source:HGNC Symbol;Acc:HGNC:4601]30586-0.467-0.1473No
116LRPAP1LDL receptor related protein associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6701]30817-0.503-0.1502No
117SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]30835-0.506-0.1473No
118EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]31143-0.556-0.1520No
119IGF1insulin like growth factor 1 [Source:HGNC Symbol;Acc:HGNC:5464]31817-0.682-0.1657No
120LILRA2leukocyte immunoglobulin like receptor A2 [Source:HGNC Symbol;Acc:HGNC:6603]32373-0.818-0.1753No
121CRIP1cysteine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:2360]33173-1.036-0.1901No
122GAS6growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]33413-1.113-0.1892No
123CDK5R1cyclin dependent kinase 5 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:1775]33478-1.133-0.1835No
124AKR1C3aldo-keto reductase family 1 member C3 [Source:HGNC Symbol;Acc:HGNC:386]33512-1.146-0.1768No
125SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]33555-1.158-0.1703No
126IRAK1interleukin 1 receptor associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:6112]33814-1.251-0.1691No
127CAPN1calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]33857-1.265-0.1619No
128INSIG1insulin induced gene 1 [Source:HGNC Symbol;Acc:HGNC:6083]34036-1.323-0.1580No
129CD81CD81 molecule [Source:HGNC Symbol;Acc:HGNC:1701]34391-1.471-0.1578No
130CREG1cellular repressor of E1A stimulated genes 1 [Source:HGNC Symbol;Acc:HGNC:2351]34905-1.690-0.1606No
131RUNX3RUNX family transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10473]35162-1.832-0.1554No
132LRP1LDL receptor related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]35720-2.206-0.1560No
133P4HA2prolyl 4-hydroxylase subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:8547]35735-2.215-0.1417No
134CSF3Rcolony stimulating factor 3 receptor [Source:HGNC Symbol;Acc:HGNC:2439]35820-2.288-0.1289No
135EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35979-2.433-0.1172No
136NRP1neuropilin 1 [Source:HGNC Symbol;Acc:HGNC:8004]35990-2.443-0.1013No
137EPS8epidermal growth factor receptor pathway substrate 8 [Source:HGNC Symbol;Acc:HGNC:3420]36237-2.705-0.0902No
138ZFP36L2ZFP36 ring finger protein like 2 [Source:HGNC Symbol;Acc:HGNC:1108]36524-3.072-0.0777No
139UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36549-3.110-0.0578No
140BCAR1BCAR1 scaffold protein, Cas family member [Source:HGNC Symbol;Acc:HGNC:971]36644-3.276-0.0387No
141SERPINF1serpin family F member 1 [Source:HGNC Symbol;Acc:HGNC:8824]36864-3.667-0.0205No
142HLA-DOAmajor histocompatibility complex, class II, DO alpha [Source:HGNC Symbol;Acc:HGNC:4936]36969-4.0330.0033No
Table: GSEA details [plain text format]



Fig 2: MODULE_223   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: MODULE_223: Random ES distribution   
Gene set null distribution of ES for MODULE_223