Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#KO_LPS_versus_KO_NA.greenbergcls.cls
#KO_LPS_versus_KO_NA_repos
Phenotypegreenbergcls.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetCSR_LATE_UP.V1_UP
Enrichment Score (ES)-0.64840144
Normalized Enrichment Score (NES)-1.3911804
Nominal p-value0.0010683761
FDR q-value0.082225844
FWER p-Value0.549
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_LATE_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]304.7660.0229No
2PARP11poly(ADP-ribose) polymerase family member 11 [Source:HGNC Symbol;Acc:HGNC:1186]1123.9780.0405No
3CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]3882.5900.0459No
4RPF2ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]9361.6190.0392No
5MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]9451.6110.0470No
6WSB2WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]10901.4370.0502No
7TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]11451.3910.0557No
8MT2Ametallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406]11911.3500.0612No
9GTF3C6general transcription factor IIIC subunit 6 [Source:HGNC Symbol;Acc:HGNC:20872]12131.3310.0673No
10MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]15121.1390.0649No
11EEF1E1eukaryotic translation elongation factor 1 epsilon 1 [Source:HGNC Symbol;Acc:HGNC:3212]15381.1250.0698No
12PSMD14proteasome 26S subunit, non-ATPase 14 [Source:HGNC Symbol;Acc:HGNC:16889]17181.0200.0700No
13EML1EMAP like 1 [Source:HGNC Symbol;Acc:HGNC:3330]19260.9320.0690No
14ASB6ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]19360.9270.0734No
15ELOCelongin C [Source:HGNC Symbol;Acc:HGNC:11617]19770.9090.0769No
16EIF5Aeukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:HGNC:3300]20050.8990.0806No
17ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]20400.8830.0841No
18FARSBphenylalanyl-tRNA synthetase subunit beta [Source:HGNC Symbol;Acc:HGNC:17800]20990.8620.0868No
19MAPRE1microtubule associated protein RP/EB family member 1 [Source:HGNC Symbol;Acc:HGNC:6890]24620.7250.0806No
20PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]25280.7000.0823No
21METMET proto-oncogene, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7029]26820.6570.0814No
22FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]27850.6220.0818No
23AHSA1activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]28270.6120.0837No
24TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]28630.5980.0857No
25PSMD2proteasome 26S subunit, non-ATPase 2 [Source:HGNC Symbol;Acc:HGNC:9559]34840.4560.0712No
26DNAJB11DnaJ heat shock protein family (Hsp40) member B11 [Source:HGNC Symbol;Acc:HGNC:14889]40050.3600.0589No
27JPT1Jupiter microtubule associated homolog 1 [Source:HGNC Symbol;Acc:HGNC:14569]41380.3330.0570No
28PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]41700.3240.0578No
29SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]42500.3070.0572No
30NKX2-1NK2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11825]46300.2410.0481No
31EIF3Beukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]46880.2340.0477No
32PRMT5protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:10894]47390.2250.0475No
33HYPKhuntingtin interacting protein K [Source:HGNC Symbol;Acc:HGNC:18418]47430.2250.0485No
34MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]48640.2040.0463No
35PDLIM5PDZ and LIM domain 5 [Source:HGNC Symbol;Acc:HGNC:17468]49200.1940.0458No
36IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]49250.1940.0466No
37MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]49690.1870.0464No
38SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]50890.1680.0440No
39MYH1myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]59070.0490.0221No
40HERC4HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:24521]59190.0460.0221No
41LYARLy1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]59460.0420.0216No
42PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]60050.0330.0202No
43MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]60140.0310.0201No
44NETO2neuropilin and tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:14644]71280.000-0.0100No
45GREM2gremlin 2, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:17655]80540.000-0.0351No
46SSTR1somatostatin receptor 1 [Source:HGNC Symbol;Acc:HGNC:11330]114660.000-0.1275No
47IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]116060.000-0.1312No
48DCBLD1discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]119270.000-0.1399No
49TMEM130transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]133840.000-0.1793No
50KISS1KiSS-1 metastasis suppressor [Source:HGNC Symbol;Acc:HGNC:6341]142710.000-0.2033No
51MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155740.000-0.2386No
52BEX1brain expressed X-linked 1 [Source:HGNC Symbol;Acc:HGNC:1036]165250.000-0.2643No
53TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170790.000-0.2793No
54SERPINB7serpin family B member 7 [Source:HGNC Symbol;Acc:HGNC:13902]177360.000-0.2970No
55CXCL12C-X-C motif chemokine ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]188190.000-0.3263No
56CXCL6C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]193290.000-0.3401No
57TRPC3transient receptor potential cation channel subfamily C member 3 [Source:HGNC Symbol;Acc:HGNC:12335]199350.000-0.3565No
58SLC16A5solute carrier family 16 member 5 [Source:HGNC Symbol;Acc:HGNC:10926]211910.000-0.3905No
59C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]217210.000-0.4048No
60KRT25keratin 25 [Source:HGNC Symbol;Acc:HGNC:30839]217460.000-0.4055No
61KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]217940.000-0.4067No
62CYP4B1cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]220350.000-0.4132No
63SNORD22small nucleolar RNA, C/D box 22 [Source:HGNC Symbol;Acc:HGNC:10145]221510.000-0.4164No
64SAMD11sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28706]231140.000-0.4424No
65ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]258200.000-0.5157No
66NUP88nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]27364-0.040-0.5573No
67CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]27443-0.052-0.5591No
68IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]27463-0.054-0.5594No
69ILF2interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]27551-0.064-0.5614No
70CDH2cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]27562-0.065-0.5613No
71CIAPIN1cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:28050]27731-0.086-0.5655No
72TRPC4transient receptor potential cation channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:12336]27810-0.095-0.5671No
73MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]27910-0.108-0.5692No
74DRAP1DR1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:3019]28080-0.126-0.5732No
75SMSspermine synthase [Source:HGNC Symbol;Acc:HGNC:11123]28157-0.134-0.5746No
76UTP18UTP18 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]28304-0.155-0.5778No
77YEATS4YEATS domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24859]28859-0.228-0.5916No
78ARHGEF1Rho guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:681]29344-0.294-0.6033No
79MT1Lmetallothionein 1L, pseudogene [Source:HGNC Symbol;Acc:HGNC:7404]29396-0.300-0.6032No
80MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]29959-0.375-0.6165No
81PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]29988-0.378-0.6154No
82NOC2LNOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:24517]30001-0.380-0.6138No
83LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30287-0.421-0.6195No
84FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]30299-0.423-0.6177No
85TEX30testis expressed 30 [Source:HGNC Symbol;Acc:HGNC:25188]30921-0.518-0.6319No
86KIFBPkinesin family binding protein [Source:HGNC Symbol;Acc:HGNC:23419]30970-0.526-0.6306No
87TOMM34translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]31070-0.543-0.6306No
88FAM216Afamily with sequence similarity 216 member A [Source:HGNC Symbol;Acc:HGNC:30180]31730-0.662-0.6451Yes
89TPM2tropomyosin 2 [Source:HGNC Symbol;Acc:HGNC:12011]31847-0.689-0.6448Yes
90YIPF3Yip1 domain family member 3 [Source:HGNC Symbol;Acc:HGNC:21023]31903-0.705-0.6428Yes
91NUDCD1NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]31928-0.711-0.6399Yes
92COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31971-0.721-0.6375Yes
93POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]31996-0.729-0.6345Yes
94HAUS2HAUS augmin like complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25530]32013-0.733-0.6313Yes
95PGM2phosphoglucomutase 2 [Source:HGNC Symbol;Acc:HGNC:8906]32014-0.733-0.6276Yes
96EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]32037-0.739-0.6245Yes
97DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]32241-0.783-0.6261Yes
98HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32676-0.898-0.6334Yes
99NUDCnuclear distribution C, dynein complex regulator [Source:HGNC Symbol;Acc:HGNC:8045]32752-0.916-0.6309Yes
100PPP5Cprotein phosphatase 5 catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9322]32837-0.936-0.6285Yes
101ACTL6Aactin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]33294-1.078-0.6355Yes
102ITGA6integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]33323-1.085-0.6308Yes
103TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]33421-1.115-0.6279Yes
104NDC1NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]33581-1.169-0.6264Yes
105TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]33744-1.226-0.6247Yes
106SLC25A11solute carrier family 25 member 11 [Source:HGNC Symbol;Acc:HGNC:10981]33795-1.244-0.6199Yes
107RAD18RAD18 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:18278]33922-1.289-0.6169Yes
108CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33952-1.297-0.6112Yes
109UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]33985-1.306-0.6056Yes
110LMNB2lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]34042-1.325-0.6005Yes
111FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]34209-1.394-0.5980Yes
112NMBneuromedin B [Source:HGNC Symbol;Acc:HGNC:7842]34291-1.431-0.5931Yes
113POLR3KRNA polymerase III subunit K [Source:HGNC Symbol;Acc:HGNC:14121]34336-1.447-0.5871Yes
114SLF1SMC5-SMC6 complex localization factor 1 [Source:HGNC Symbol;Acc:HGNC:25408]34371-1.463-0.5807Yes
115CMC2C-X9-C motif containing 2 [Source:HGNC Symbol;Acc:HGNC:24447]34384-1.467-0.5738Yes
116HMGB1high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]34418-1.480-0.5673Yes
117CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]34560-1.537-0.5635Yes
118CDK5cyclin dependent kinase 5 [Source:HGNC Symbol;Acc:HGNC:1774]34694-1.589-0.5591Yes
119CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34724-1.608-0.5519Yes
120ZNF367zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]34728-1.609-0.5440Yes
121KATNAL1katanin catalytic subunit A1 like 1 [Source:HGNC Symbol;Acc:HGNC:28361]34731-1.611-0.5360Yes
122AP1S2adaptor related protein complex 1 subunit sigma 2 [Source:HGNC Symbol;Acc:HGNC:560]34955-1.714-0.5336Yes
123FANCAFA complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]34968-1.723-0.5253Yes
124CDC7cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]35063-1.780-0.5190Yes
125TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]35107-1.803-0.5112Yes
126S1PR1sphingosine-1-phosphate receptor 1 [Source:HGNC Symbol;Acc:HGNC:3165]35164-1.833-0.5036Yes
127MTHFD1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:7432]35213-1.867-0.4956Yes
128CCDC34coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:HGNC:25079]35225-1.876-0.4866Yes
129DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]35322-1.930-0.4795Yes
130CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]35430-1.996-0.4725Yes
131MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35462-2.024-0.4633Yes
132CTPS1CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]35532-2.069-0.4549Yes
133TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]35535-2.071-0.4446Yes
134FAM83Dfamily with sequence similarity 83 member D [Source:HGNC Symbol;Acc:HGNC:16122]35555-2.090-0.4347Yes
135PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35613-2.129-0.4257Yes
136ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]35645-2.149-0.4158Yes
137BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]35798-2.267-0.4086Yes
138MAZMYC associated zinc finger protein [Source:HGNC Symbol;Acc:HGNC:6914]36049-2.499-0.4030Yes
139EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36195-2.657-0.3937Yes
140ALKBH7alkB homolog 7 [Source:HGNC Symbol;Acc:HGNC:21306]36262-2.733-0.3819Yes
141CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36318-2.818-0.3693Yes
142SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]36331-2.833-0.3556Yes
143GINS3GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]36370-2.875-0.3423Yes
144PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36429-2.936-0.3292Yes
145GYS1glycogen synthase 1 [Source:HGNC Symbol;Acc:HGNC:4706]36442-2.950-0.3149Yes
146KCNC4potassium voltage-gated channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:6236]36459-2.976-0.3005Yes
147NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36488-3.032-0.2862Yes
148GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]36495-3.045-0.2712Yes
149TSPAN13tetraspanin 13 [Source:HGNC Symbol;Acc:HGNC:21643]36523-3.071-0.2566Yes
150TCF19transcription factor 19 [Source:HGNC Symbol;Acc:HGNC:11629]36540-3.100-0.2416Yes
151UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36549-3.110-0.2264Yes
152SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36578-3.169-0.2114Yes
153PAICSphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase [Source:HGNC Symbol;Acc:HGNC:8587]36612-3.224-0.1962Yes
154UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36656-3.296-0.1810Yes
155ANLNanillin actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]36657-3.298-0.1646Yes
156POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36677-3.335-0.1485Yes
157FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36684-3.340-0.1320Yes
158CHEK2checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]36718-3.398-0.1160Yes
159KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36732-3.413-0.0994Yes
160MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36749-3.440-0.0827Yes
161CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]36771-3.483-0.0659Yes
162HIP1huntingtin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:4913]36781-3.504-0.0487Yes
163CLSPNclaspin [Source:HGNC Symbol;Acc:HGNC:19715]36845-3.629-0.0324Yes
164RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36911-3.844-0.0150Yes
165BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36957-3.9860.0036Yes
Table: GSEA details [plain text format]



Fig 2: CSR_LATE_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_LATE_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for CSR_LATE_UP.V1_UP