Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.49359062
Normalized Enrichment Score (NES)1.3412968
Nominal p-value0.0
FDR q-value0.08555182
FWER p-Value0.328
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]144.7460.0268Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]194.6870.0535Yes
3CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]334.3960.0783Yes
4ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]354.3690.1032Yes
5BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]364.3250.1280Yes
6EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]514.0810.1510Yes
7ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]663.9380.1731Yes
8TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]873.7180.1938Yes
9MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]943.6540.2146Yes
10JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1253.4240.2334Yes
11SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1493.2740.2515Yes
12ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]1673.1880.2692Yes
13STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]3782.4140.2774Yes
14RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]3912.3850.2907Yes
15GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]4082.3370.3036Yes
16RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]5162.0540.3125Yes
17NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]5402.0250.3234Yes
18ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]6101.8990.3324Yes
19UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]6231.8860.3429Yes
20MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]6991.7660.3510Yes
21ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]7511.6820.3592Yes
22TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]7571.6780.3687Yes
23TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]7931.6370.3771Yes
24LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]9041.5220.3828Yes
25KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]9931.4380.3887Yes
26ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]10551.3930.3950Yes
27BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]11551.3230.3999Yes
28LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]12141.2760.4056Yes
29EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]13231.1970.4095Yes
30PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]13481.1790.4156Yes
31MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]13881.1590.4212Yes
32HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]14301.1360.4266Yes
33GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]14461.1280.4326Yes
34WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]14641.1200.4386Yes
35NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]15101.1020.4437Yes
36RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]15531.0850.4487Yes
37TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]15631.0820.4547Yes
38TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]16661.0390.4579Yes
39EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]17231.0150.4621Yes
40TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]19810.9070.4604Yes
41GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]19930.9020.4652Yes
42PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]20010.8990.4702Yes
43LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]20460.8790.4740Yes
44ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]22010.8180.4745Yes
45FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]22250.8110.4786Yes
46SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]23100.7840.4808Yes
47PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]24120.7480.4823Yes
48ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]25690.7020.4821Yes
49MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]25930.6960.4855Yes
50ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]27890.6410.4838Yes
51TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]28960.6140.4845Yes
52APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]29080.6120.4877Yes
53BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]31260.5630.4850Yes
54MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]31350.5610.4880Yes
55UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]33670.5070.4847Yes
56GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]33740.5060.4874Yes
57USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]34690.4860.4876Yes
58FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]34920.4830.4898Yes
59DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]35140.4780.4920Yes
60TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]36350.4530.4913Yes
61C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]37390.4340.4910Yes
62UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]37660.4310.4928Yes
63PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]38250.4200.4936Yes
64SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]40020.3880.4910No
65DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]40790.3760.4911No
66NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]41060.3730.4926No
67DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]42300.3500.4912No
68FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]45300.3030.4849No
69DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]45820.2970.4852No
70NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]46330.2900.4855No
71BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]50070.2300.4767No
72LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]50620.2210.4765No
73PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]51470.2090.4754No
74SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]51750.2050.4759No
75BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]53680.1750.4717No
76MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]53710.1740.4726No
77SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]54430.1630.4716No
78RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]59450.0940.4586No
79MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]60900.0780.4551No
80BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]62350.0600.4516No
81ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]62400.0590.4518No
82EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]64130.0370.4474No
83LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]66630.0050.4406No
84SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]66890.0050.4400No
85ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]70120.0000.4313No
86FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]72750.0000.4242No
87TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]89430.0000.3790No
88C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]96000.0000.3612No
89ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]100300.0000.3496No
90NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]101630.0000.3461No
91CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]112310.0000.3171No
92ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]117320.0000.3036No
93IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]120290.0000.2956No
94CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]125140.0000.2825No
95TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]127580.0000.2759No
96GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]130450.0000.2681No
97GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]131610.0000.2650No
98ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]134920.0000.2561No
99TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]136790.0000.2511No
100SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]139020.0000.2450No
101TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]144320.0000.2307No
102SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]160430.0000.1871No
103FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]170300.0000.1604No
104RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]170320.0000.1604No
105VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]173640.0000.1514No
106PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176690.0000.1432No
107DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]184860.0000.1211No
108BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]190610.0000.1055No
109RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]202990.0000.0720No
110INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]203120.0000.0717No
111TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]204660.0000.0675No
112C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]219180.0000.0282No
113FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]236700.000-0.0192No
114LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]237550.000-0.0215No
115LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]239910.000-0.0278No
116ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]259320.000-0.0804No
117GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]27531-0.010-0.1236No
118RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]27645-0.027-0.1265No
119SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]28101-0.080-0.1384No
120CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]28338-0.112-0.1441No
121AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]28752-0.156-0.1544No
122DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]28861-0.172-0.1564No
123NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]28912-0.180-0.1567No
124ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]28924-0.181-0.1560No
125UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]29025-0.193-0.1576No
126MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]29110-0.202-0.1587No
127KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]29305-0.225-0.1626No
128VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]29406-0.239-0.1640No
129GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]29422-0.241-0.1630No
130B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]29594-0.265-0.1661No
131STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]29678-0.275-0.1668No
132LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]30016-0.315-0.1741No
133CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]30109-0.325-0.1748No
134PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]30124-0.327-0.1733No
135ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]30146-0.330-0.1720No
136RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]30188-0.335-0.1711No
137ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]30227-0.340-0.1702No
138REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]30340-0.356-0.1712No
139FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]30780-0.420-0.1807No
140ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]30787-0.421-0.1785No
141MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]31087-0.466-0.1839No
142CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]31159-0.475-0.1831No
143DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]31330-0.503-0.1848No
144EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]31760-0.572-0.1932No
145QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]31948-0.601-0.1948No
146MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]32831-0.800-0.2141No
147DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]33036-0.852-0.2148No
148PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]34430-1.264-0.2453No
149H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]34488-1.289-0.2394No
150TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]34632-1.342-0.2356No
151SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]34812-1.424-0.2323No
152KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]35079-1.560-0.2306No
153DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]35162-1.604-0.2237No
154NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]35222-1.637-0.2159No
155MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]35254-1.652-0.2073No
156REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]35256-1.654-0.1979No
157TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]35458-1.764-0.1932No
158RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]35641-1.881-0.1874No
159CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]35701-1.927-0.1780No
160ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]35871-2.057-0.1708No
161HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]35934-2.112-0.1604No
162CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]35950-2.119-0.1486No
163RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]36010-2.162-0.1379No
164CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]36137-2.270-0.1283No
165ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]36144-2.276-0.1154No
166ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]36327-2.453-0.1063No
167VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]36472-2.641-0.0951No
168TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36656-2.911-0.0834No
169AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]36678-2.957-0.0671No
170TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36765-3.127-0.0515No
171TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36794-3.167-0.0342No
172KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36861-3.322-0.0169No
173RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]37031-4.0400.0016No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN