Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.42981228
Normalized Enrichment Score (NES)1.1577632
Nominal p-value0.072164945
FDR q-value0.16508344
FWER p-Value0.515
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]04.9250.0259Yes
2IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]24.9200.0517Yes
3GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]234.5860.0752Yes
4TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]404.2640.0972Yes
5BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]494.1240.1186Yes
6GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]913.6600.1367Yes
7SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1183.4500.1541Yes
8GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1483.2870.1706Yes
9IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]1503.2680.1877Yes
10ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]1553.2550.2047Yes
11SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]1613.2260.2215Yes
12TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]1723.1560.2378Yes
13CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]1833.1130.2539Yes
14SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2412.8280.2672Yes
15CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]2512.7620.2815Yes
16CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2962.6080.2940Yes
17PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]3842.3960.3042Yes
18IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]4672.1660.3133Yes
19ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4962.1020.3236Yes
20MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]5462.0170.3329Yes
21SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]6261.8780.3406Yes
22ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]6471.8360.3497Yes
23CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]6861.7800.3580Yes
24TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]7571.6780.3649Yes
25BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]7771.6470.3731Yes
26FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]7851.6420.3815Yes
27CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]8031.6250.3896Yes
28TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]8711.5490.3959Yes
29EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]9661.4610.4010Yes
30CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]9811.4430.4082Yes
31ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]10551.3930.4136Yes
32DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]12171.2750.4159Yes
33PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]12221.2710.4225Yes
34SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]14931.1070.4210Yes
35HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]15721.0780.4245Yes
36TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]15861.0750.4298Yes
37CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]19970.9000.4234No
38NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]20840.8640.4256No
39DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]26380.6830.4143No
40ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]27740.6450.4140No
41CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]28170.6320.4162No
42BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]33630.5080.4041No
43ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]34850.4830.4033No
44JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]34900.4830.4058No
45GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]36000.4610.4052No
46RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]38990.4070.3993No
47PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]39160.4040.4010No
48GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]40590.3800.3991No
49ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]41950.3570.3974No
50TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]43470.3310.3950No
51CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]44220.3200.3947No
52CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]44510.3160.3956No
53BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]47160.2780.3899No
54XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]47900.2660.3893No
55IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]49600.2370.3860No
56IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]49980.2310.3862No
57PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]50140.2280.3870No
58BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]52000.2010.3830No
59BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]53190.1830.3808No
60HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]53730.1740.3803No
61DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]54850.1570.3781No
62DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]56420.1360.3746No
63BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]56510.1340.3751No
64MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]59210.0970.3683No
65BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]61740.0680.3618No
66RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]62650.0560.3597No
67BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]77220.0000.3203No
68CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]79180.0000.3150No
69PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]80060.0000.3126No
70GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]87280.0000.2931No
71FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]94800.0000.2728No
72GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]98050.0000.2640No
73PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]102230.0000.2527No
74HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]110850.0000.2294No
75LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]115750.0000.2161No
76PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]117520.0000.2114No
77EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]117610.0000.2112No
78IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]120400.0000.2036No
79TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]126750.0000.1865No
80CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]128540.0000.1816No
81IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]139890.0000.1509No
82BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]156860.0000.1050No
83CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]158680.0000.1001No
84DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]161290.0000.0931No
85F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]162520.0000.0898No
86F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]165710.0000.0812No
87AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]167070.0000.0775No
88TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171900.0000.0645No
89DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]181390.0000.0388No
90LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]187610.0000.0220No
91AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]198990.000-0.0088No
92FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]202270.000-0.0177No
93SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]215570.000-0.0537No
94KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]219900.000-0.0654No
95CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]230120.000-0.0930No
96CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]230920.000-0.0951No
97IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]247390.000-0.1397No
98CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]267910.000-0.1953No
99TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]274720.000-0.2137No
100APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]27669-0.030-0.2188No
101NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27845-0.051-0.2233No
102PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]28127-0.084-0.2305No
103VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28898-0.177-0.2504No
104SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29098-0.201-0.2547No
105IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]29317-0.226-0.2594No
106LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]29444-0.244-0.2616No
107BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29548-0.259-0.2630No
108PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]29737-0.281-0.2666No
109BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]29859-0.293-0.2683No
110PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]30167-0.333-0.2749No
111DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]30271-0.347-0.2759No
112MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]30880-0.434-0.2901No
113CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]30881-0.434-0.2878No
114IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31490-0.528-0.3015No
115BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]31502-0.531-0.2990No
116SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]31541-0.538-0.2972No
117ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]31678-0.560-0.2979No
118PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]32349-0.689-0.3124No
119CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]32413-0.702-0.3105No
120HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]32479-0.717-0.3085No
121SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]32957-0.831-0.3170No
122PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]33103-0.867-0.3164No
123DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]33130-0.873-0.3125No
124RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]33620-1.009-0.3205No
125CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]33774-1.047-0.3191No
126CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]33850-1.068-0.3155No
127MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]33926-1.087-0.3118No
128ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]34024-1.122-0.3086No
129TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]34727-1.389-0.3203No
130CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34902-1.472-0.3173No
131GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]34936-1.486-0.3104No
132PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]34952-1.492-0.3029No
133PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35004-1.518-0.2963No
134RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]35161-1.604-0.2921No
135DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]35186-1.616-0.2843No
136DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]35262-1.657-0.2776No
137LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]35297-1.674-0.2698No
138RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35330-1.689-0.2618No
139CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]35378-1.719-0.2540No
140EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]35416-1.741-0.2459No
141BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]35596-1.849-0.2410No
142TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35626-1.864-0.2320No
143RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]35641-1.881-0.2225No
144CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35643-1.882-0.2127No
145EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35761-1.973-0.2055No
146CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]35885-2.065-0.1980No
147FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]35927-2.106-0.1880No
148ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36096-2.237-0.1808No
149TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36209-2.333-0.1716No
150CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]36244-2.370-0.1601No
151GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]36246-2.371-0.1476No
152CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]36581-2.806-0.1420No
153CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36589-2.814-0.1274No
154GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36594-2.820-0.1127No
155GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36597-2.824-0.0979No
156BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36790-3.161-0.0865No
157H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36830-3.253-0.0705No
158WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36855-3.309-0.0537No
159BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36888-3.420-0.0367No
160BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36938-3.605-0.0191No
161PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]37074-4.4070.0004No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS