Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.45968598
Normalized Enrichment Score (NES)-1.0178806
Nominal p-value0.42468855
FDR q-value0.69087034
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]1013.6060.0223No
2ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]1193.4480.0457No
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]1643.2130.0669No
4PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]1663.1920.0890No
5NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]4592.1950.0963No
6POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]5072.0810.1095No
7HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]5382.0270.1227No
8APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]5781.9620.1353No
9COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]7231.7140.1433No
10GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]8261.5970.1516No
11ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]8561.5620.1616No
12GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]8751.5450.1719No
13GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]9181.5060.1812No
14DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]10191.4180.1883No
15ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]10981.3620.1956No
16RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]13181.1990.1980No
17POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]13381.1860.2057No
18SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]14711.1180.2099No
19VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]18920.9470.2051No
20SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]22540.7990.2009No
21SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]24640.7360.2004No
22POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]25210.7180.2038No
23TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]27040.6610.2035No
24NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]27680.6470.2063No
25ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]27940.6400.2100No
26GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]28230.6310.2136No
27TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]28420.6260.2175No
28GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]28430.6250.2218No
29ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]29050.6120.2244No
30ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]30410.5790.2248No
31GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]31830.5490.2248No
32ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]35620.4680.2178No
33RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]40720.3770.2066No
34CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]41170.3700.2080No
35POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]41610.3630.2094No
36NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]43690.3280.2061No
37POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]44610.3150.2058No
38ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]44980.3090.2069No
39POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]45900.2960.2065No
40POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]46520.2880.2069No
41EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]47570.2720.2059No
42SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]49400.2400.2027No
43CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]51940.2010.1972No
44POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]52810.1880.1962No
45CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]54610.1600.1925No
46TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]54650.1590.1935No
47TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]56270.1370.1901No
48TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]59010.1000.1834No
49POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]60460.0830.1801No
50RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]62020.0640.1763No
51TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]63110.0510.1737No
52RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]66140.0120.1657No
53NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]66900.0040.1637No
54BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]158860.000-0.0853No
55BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]178960.000-0.1396No
56NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]237170.000-0.2972No
57ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]261680.000-0.3635No
58TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]27579-0.018-0.4015No
59SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]27592-0.019-0.4017No
60SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]27615-0.022-0.4022No
61DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]27664-0.029-0.4033No
62SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]27761-0.040-0.4056No
63DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]28084-0.078-0.4138No
64CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]28095-0.080-0.4135No
65NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]28391-0.118-0.4206No
66POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]28627-0.144-0.4260No
67MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]28721-0.152-0.4275No
68SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]28872-0.175-0.4303No
69PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]29010-0.190-0.4327No
70GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]29134-0.205-0.4346No
71TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]29265-0.220-0.4366No
72ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]29288-0.223-0.4357No
73GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]29362-0.233-0.4360No
74BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29548-0.259-0.4392No
75POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]29628-0.269-0.4395No
76POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]29645-0.272-0.4380No
77TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]29665-0.274-0.4367No
78EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]29873-0.295-0.4402No
79BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]29941-0.304-0.4399No
80MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]30044-0.317-0.4405No
81CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]30120-0.327-0.4402No
82ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]30540-0.384-0.4489No
83SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]30542-0.384-0.4463No
84RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]30853-0.430-0.4517No
85VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]31089-0.466-0.4548No
86SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]31270-0.495-0.4563Yes
87POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]31360-0.507-0.4551Yes
88POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]31413-0.515-0.4530Yes
89NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]31518-0.534-0.4521Yes
90POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]31522-0.535-0.4485Yes
91SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]31679-0.560-0.4488Yes
92STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]31856-0.585-0.4495Yes
93IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]31946-0.601-0.4477Yes
94NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]32079-0.629-0.4469Yes
95UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]32264-0.667-0.4473Yes
96POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]32303-0.677-0.4436Yes
97ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]32378-0.693-0.4408Yes
98HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]32541-0.732-0.4401Yes
99POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]32595-0.744-0.4364Yes
100FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]32680-0.764-0.4334Yes
101UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]32749-0.780-0.4298Yes
102MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]32787-0.790-0.4253Yes
103CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]32995-0.841-0.4251Yes
104ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]33204-0.894-0.4245Yes
105NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]33217-0.898-0.4186Yes
106VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]33363-0.938-0.4160Yes
107NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]33383-0.944-0.4100Yes
108TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]33395-0.948-0.4037Yes
109TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]33403-0.949-0.3973Yes
110TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]33500-0.974-0.3932Yes
111POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]33509-0.977-0.3866Yes
112AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]33543-0.983-0.3807Yes
113USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]33766-1.046-0.3794Yes
114GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]33770-1.047-0.3722Yes
115RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]33801-1.054-0.3658Yes
116ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]33946-1.095-0.3621Yes
117AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]33996-1.115-0.3556Yes
118PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]34110-1.145-0.3508Yes
119NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]34182-1.172-0.3445Yes
120DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]34528-1.304-0.3448Yes
121GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]34552-1.315-0.3363Yes
122DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]34612-1.336-0.3287Yes
123POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34734-1.392-0.3223Yes
124NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]34737-1.394-0.3127Yes
125RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]34852-1.446-0.3057Yes
126POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]34925-1.483-0.2974Yes
127XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]34939-1.487-0.2874Yes
128SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]35147-1.598-0.2819Yes
129POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]35157-1.602-0.2711Yes
130ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35282-1.667-0.2628Yes
131RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]35321-1.686-0.2522Yes
132RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]35435-1.752-0.2431Yes
133RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]35533-1.810-0.2331Yes
134RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]35535-1.811-0.2206Yes
135ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]35649-1.885-0.2106Yes
136REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]35740-1.954-0.1995Yes
137RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35922-2.100-0.1898Yes
138PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35994-2.147-0.1768Yes
139POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]36270-2.402-0.1676Yes
140AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]36290-2.418-0.1513Yes
141NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36293-2.422-0.1346Yes
142POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36434-2.597-0.1204Yes
143AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]36452-2.629-0.1026Yes
144DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]36479-2.649-0.0849Yes
145RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36539-2.738-0.0675Yes
146POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]36554-2.767-0.0487Yes
147GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36597-2.824-0.0302Yes
148DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36735-3.058-0.0127Yes
149LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36816-3.2140.0074Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR