Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.77479327
Normalized Enrichment Score (NES)1.9389359
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]374.2970.0277Yes
2OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]484.1330.0551Yes
3HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]534.0500.0820Yes
4DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]633.9920.1085Yes
5IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]773.7990.1335Yes
6IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]853.7240.1582Yes
7IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]863.7230.1831Yes
8TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]923.6590.2074Yes
9HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]933.6540.2318Yes
10CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]1013.6060.2557Yes
11IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]1263.4180.2779Yes
12OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]1333.3640.3002Yes
13MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]1433.2990.3220Yes
14ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]1553.2550.3435Yes
15PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]1843.1130.3635Yes
16RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]2202.9340.3822Yes
17LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]2462.7910.4002Yes
18GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]2742.6820.4174Yes
19EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]2812.6570.4349Yes
20SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]2852.6400.4525Yes
21SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]3172.5470.4687Yes
22STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]3582.4590.4840Yes
23TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]3642.4410.5002Yes
24PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]3952.3730.5153Yes
25IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]3972.3670.5311Yes
26IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]4672.1660.5437Yes
27ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]4692.1630.5581Yes
28TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]4742.1530.5724Yes
29RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]4912.1100.5860Yes
30IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]5102.0760.5994Yes
31PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]5332.0330.6124Yes
32IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]5531.9920.6252Yes
33DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]5571.9900.6384Yes
34PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]5671.9780.6514Yes
35OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]6031.9140.6632Yes
36PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]6151.8950.6756Yes
37UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]6231.8860.6880Yes
38EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]7551.6790.6957Yes
39CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]7881.6400.7058Yes
40TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]8711.5490.7139Yes
41MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]8991.5270.7234Yes
42TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]10051.4240.7301Yes
43PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]10071.4230.7396Yes
44TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]11171.3510.7456Yes
45IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]13081.2070.7486Yes
46CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]14041.1460.7537Yes
47UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]14061.1460.7613Yes
48CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]15711.0780.7641Yes
49PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]18640.9620.7626Yes
50GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]19930.9020.7652Yes
51CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]19970.9000.7711Yes
52CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]20780.8670.7747Yes
53PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]24050.7500.7709Yes
54PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]24530.7370.7746Yes
55CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]28170.6320.7690Yes
56TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]28850.6160.7713Yes
57HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]29540.6000.7735Yes
58IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]31940.5470.7707Yes
59SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]32210.5390.7736Yes
60ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]33060.5220.7748Yes
61TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]36520.4500.7685No
62LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]37050.4400.7700No
63WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]38630.4130.7685No
64TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]39850.3920.7679No
65B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]43730.3270.7596No
66IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]44230.3190.7604No
67PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]47300.2750.7540No
68IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]48810.2500.7516No
69RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]60390.0840.7209No
70SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]75220.0000.6808No
71CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]90700.0000.6390No
72BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]91860.0000.6359No
73LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]95250.0000.6268No
74RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]108010.0000.5923No
75IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]117540.0000.5666No
76BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]127040.0000.5409No
77IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]140560.0000.5044No
78IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]177530.0000.4045No
79CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189090.0000.3733No
80NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]193080.0000.3625No
81LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]245390.0000.2211No
82NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]27555-0.0140.1397No
83TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]29711-0.2790.0833No
84PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]29896-0.2980.0804No
85C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]30184-0.3350.0748No
86IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31490-0.5280.0431No
87LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]32280-0.6710.0262No
88IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]32838-0.8010.0165No
89ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]33062-0.8580.0162No
90SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]33270-0.9140.0168No
91NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]33835-1.0640.0086No
92IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]34229-1.1910.0060No
93MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]34417-1.2560.0093No
94CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]34633-1.3420.0124No
95CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]36088-2.229-0.0120No
96TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36209-2.3330.0004No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36901-3.5020.0051No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE