Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_SPERMATOGENESIS
Enrichment Score (ES)-0.6197356
Normalized Enrichment Score (NES)-1.3580917
Nominal p-value0.014925373
FDR q-value0.10463499
FWER p-Value0.454
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_SPERMATOGENESIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DPEP3dipeptidase 3 [Source:HGNC Symbol;Acc:HGNC:23029]2732.6840.0255No
2IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]8831.5420.0279No
3PGS1phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]11941.2940.0354No
4CNIH2cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]14521.1250.0423No
5TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]15631.0820.0525No
6CCT6Bchaperonin containing TCP1 subunit 6B [Source:HGNC Symbol;Acc:HGNC:1621]19430.9210.0536No
7ELOVL3ELOVL fatty acid elongase 3 [Source:HGNC Symbol;Acc:HGNC:18047]21280.8450.0590No
8STAM2signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]24360.7410.0597No
9PAPOLBpoly(A) polymerase beta [Source:HGNC Symbol;Acc:HGNC:15970]25550.7070.0652No
10CSNK2A2casein kinase 2 alpha 2 [Source:HGNC Symbol;Acc:HGNC:2459]34730.4850.0463No
11AGFG1ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]37580.4320.0440No
12POMCproopiomelanocortin [Source:HGNC Symbol;Acc:HGNC:9201]38090.4220.0478No
13RAD17RAD17 checkpoint clamp loader component [Source:HGNC Symbol;Acc:HGNC:9807]41490.3650.0431No
14CLVS1clavesin 1 [Source:HGNC Symbol;Acc:HGNC:23139]43250.3350.0425No
15PACRGparkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152]47830.2660.0334No
16TSNtranslin [Source:HGNC Symbol;Acc:HGNC:12379]48320.2580.0352No
17NAA11N-alpha-acetyltransferase 11, NatA catalytic subunit [Source:HGNC Symbol;Acc:HGNC:28125]48350.2570.0383No
18TCP11t-complex 11 [Source:HGNC Symbol;Acc:HGNC:11658]50680.2210.0347No
19TEKT2tektin 2 [Source:HGNC Symbol;Acc:HGNC:11725]51030.2160.0365No
20PIAS2protein inhibitor of activated STAT 2 [Source:HGNC Symbol;Acc:HGNC:17311]51080.2150.0390No
21TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]52980.1860.0362No
22ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]53550.1770.0368No
23GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]55500.1470.0334No
24CLGNcalmegin [Source:HGNC Symbol;Acc:HGNC:2060]55700.1440.0346No
25ACTL7Bactin like 7B [Source:HGNC Symbol;Acc:HGNC:162]59960.0880.0242No
26CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]61350.0730.0214No
27PSMG1proteasome assembly chaperone 1 [Source:HGNC Symbol;Acc:HGNC:3043]63030.0510.0175No
28MAST2microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]66520.0070.0081No
29SCG5secretogranin V [Source:HGNC Symbol;Acc:HGNC:10816]69190.0000.0009No
30SCG3secretogranin III [Source:HGNC Symbol;Acc:HGNC:13707]69210.0000.0009No
31ADCYAP1adenylate cyclase activating polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:241]77100.000-0.0204No
32ART3ADP-ribosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:725]78140.000-0.0232No
33CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]79180.000-0.0260No
34ZC2HC1Czinc finger C2HC-type containing 1C [Source:HGNC Symbol;Acc:HGNC:20354]85990.000-0.0444No
35HOXB1homeobox B1 [Source:HGNC Symbol;Acc:HGNC:5111]91410.000-0.0590No
36ADAM2ADAM metallopeptidase domain 2 [Source:HGNC Symbol;Acc:HGNC:198]92170.000-0.0611No
37ADAD1adenosine deaminase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30713]93680.000-0.0651No
38CAMK4calcium/calmodulin dependent protein kinase IV [Source:HGNC Symbol;Acc:HGNC:1464]93870.000-0.0656No
39CRISP2cysteine rich secretory protein 2 [Source:HGNC Symbol;Acc:HGNC:12024]94270.000-0.0667No
40NPY5Rneuropeptide Y receptor Y5 [Source:HGNC Symbol;Acc:HGNC:7958]94340.000-0.0668No
41DMRT1doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]98930.000-0.0792No
42TULP2TUB like protein 2 [Source:HGNC Symbol;Acc:HGNC:12424]104380.000-0.0939No
43CFTRCF transmembrane conductance regulator [Source:HGNC Symbol;Acc:HGNC:1884]104690.000-0.0947No
44LDHClactate dehydrogenase C [Source:HGNC Symbol;Acc:HGNC:6544]113850.000-0.1195No
45PRM2protamine 2 [Source:HGNC Symbol;Acc:HGNC:9448]118260.000-0.1314No
46SEPTIN4septin 4 [Source:HGNC Symbol;Acc:HGNC:9165]120040.000-0.1362No
47JAM3junctional adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:15532]123430.000-0.1453No
48THEGtheg spermatid protein [Source:HGNC Symbol;Acc:HGNC:13706]129540.000-0.1618No
49TNP2transition protein 2 [Source:HGNC Symbol;Acc:HGNC:11952]151360.000-0.2209No
50TNP1transition protein 1 [Source:HGNC Symbol;Acc:HGNC:11951]151380.000-0.2209No
51HTR5A5-hydroxytryptamine receptor 5A [Source:HGNC Symbol;Acc:HGNC:5300]157460.000-0.2373No
52MTNR1Amelatonin receptor 1A [Source:HGNC Symbol;Acc:HGNC:7463]159450.000-0.2427No
53DCCDCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]161240.000-0.2475No
54GAPDHSglyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:HGNC:24864]165750.000-0.2597No
55AKAP4A-kinase anchoring protein 4 [Source:HGNC Symbol;Acc:HGNC:374]167210.000-0.2636No
56DMC1DNA meiotic recombinase 1 [Source:HGNC Symbol;Acc:HGNC:2927]169610.000-0.2701No
57TKTL1transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]172740.000-0.2785No
58HBZhemoglobin subunit zeta [Source:HGNC Symbol;Acc:HGNC:4835]173150.000-0.2796No
59SYCP1synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]178730.000-0.2947No
60DNAJB8DnaJ heat shock protein family (Hsp40) member B8 [Source:HGNC Symbol;Acc:HGNC:23699]185180.000-0.3121No
61IL12RB2interleukin 12 receptor subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:5972]196020.000-0.3414No
62PCSK1Nproprotein convertase subtilisin/kexin type 1 inhibitor [Source:HGNC Symbol;Acc:HGNC:17301]207230.000-0.3717No
63SHESrc homology 2 domain containing E [Source:HGNC Symbol;Acc:HGNC:27004]208380.000-0.3748No
64H1-6H1.6 linker histone, cluster member [Source:HGNC Symbol;Acc:HGNC:4720]227730.000-0.4271No
65MEP1Bmeprin A subunit beta [Source:HGNC Symbol;Acc:HGNC:7020]232710.000-0.4406No
66ACRV1acrosomal vesicle protein 1 [Source:HGNC Symbol;Acc:HGNC:127]234610.000-0.4457No
67TSSK2testis specific serine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11401]245690.000-0.4756No
68SNAP91synaptosome associated protein 91 [Source:HGNC Symbol;Acc:HGNC:14986]246930.000-0.4790No
69CST8cystatin 8 [Source:HGNC Symbol;Acc:HGNC:2480]247310.000-0.4800No
70ODF1outer dense fiber of sperm tails 1 [Source:HGNC Symbol;Acc:HGNC:8113]264120.000-0.5254No
71ZNRF4zinc and ring finger 4 [Source:HGNC Symbol;Acc:HGNC:17726]264500.000-0.5264No
72ACEangiotensin I converting enzyme [Source:HGNC Symbol;Acc:HGNC:2707]270950.000-0.5438No
73MAP7microtubule associated protein 7 [Source:HGNC Symbol;Acc:HGNC:6869]273750.000-0.5514No
74SLC2A5solute carrier family 2 member 5 [Source:HGNC Symbol;Acc:HGNC:11010]274510.000-0.5534No
75OAZ3ornithine decarboxylase antizyme 3 [Source:HGNC Symbol;Acc:HGNC:8097]27843-0.051-0.5634No
76NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27845-0.051-0.5628No
77PHKG2phosphorylase kinase catalytic subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:8931]27921-0.062-0.5640No
78GPR182G protein-coupled receptor 182 [Source:HGNC Symbol;Acc:HGNC:13708]28018-0.069-0.5658No
79YBX2Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]28025-0.070-0.5651No
80COILcoilin [Source:HGNC Symbol;Acc:HGNC:2184]28052-0.073-0.5649No
81ACRBPacrosin binding protein [Source:HGNC Symbol;Acc:HGNC:17195]28210-0.096-0.5680No
82GAD1glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]28217-0.097-0.5670No
83GSTM3glutathione S-transferase mu 3 [Source:HGNC Symbol;Acc:HGNC:4635]28301-0.108-0.5679No
84TALDO1transaldolase 1 [Source:HGNC Symbol;Acc:HGNC:11559]28337-0.112-0.5675No
85PEBP1phosphatidylethanolamine binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8630]28754-0.156-0.5768No
86MLLT10MLLT10 histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]28820-0.165-0.5765No
87IP6K1inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]28931-0.182-0.5773No
88DDX25DEAD-box helicase 25 [Source:HGNC Symbol;Acc:HGNC:18698]28975-0.188-0.5761No
89MLF1myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:HGNC:7125]29172-0.209-0.5789No
90ALOX15arachidonate 15-lipoxygenase [Source:HGNC Symbol;Acc:HGNC:433]29204-0.214-0.5771No
91DDX4DEAD-box helicase 4 [Source:HGNC Symbol;Acc:HGNC:18700]30337-0.355-0.6034No
92CHRM4cholinergic receptor muscarinic 4 [Source:HGNC Symbol;Acc:HGNC:1953]30682-0.404-0.6077No
93PDHA2pyruvate dehydrogenase E1 subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:8807]30717-0.409-0.6036No
94CLPBcaseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]31104-0.468-0.6083No
95HSPA1Lheat shock protein family A (Hsp70) member 1 like [Source:HGNC Symbol;Acc:HGNC:5234]31526-0.536-0.6132Yes
96ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]31610-0.551-0.6087Yes
97BRAFB-Raf proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1097]31623-0.552-0.6022Yes
98MTORmechanistic target of rapamycin kinase [Source:HGNC Symbol;Acc:HGNC:3942]31699-0.564-0.5973Yes
99AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]31738-0.568-0.5914Yes
100VDAC3voltage dependent anion channel 3 [Source:HGNC Symbol;Acc:HGNC:12674]31891-0.591-0.5883Yes
101SIRT1sirtuin 1 [Source:HGNC Symbol;Acc:HGNC:14929]32222-0.658-0.5891Yes
102CHFRcheckpoint with forkhead and ring finger domains [Source:HGNC Symbol;Acc:HGNC:20455]32258-0.666-0.5819Yes
103RPL39Lribosomal protein L39 like [Source:HGNC Symbol;Acc:HGNC:17094]32556-0.734-0.5809Yes
104PRKAR2Aprotein kinase cAMP-dependent type II regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9391]33166-0.885-0.5866Yes
105PHF7PHD finger protein 7 [Source:HGNC Symbol;Acc:HGNC:18458]33235-0.903-0.5773Yes
106GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]33288-0.920-0.5675Yes
107PARP2poly(ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]33450-0.960-0.5601Yes
108IDEinsulin degrading enzyme [Source:HGNC Symbol;Acc:HGNC:5381]33623-1.010-0.5523Yes
109SPATA6spermatogenesis associated 6 [Source:HGNC Symbol;Acc:HGNC:18309]33727-1.039-0.5424Yes
110PGK2phosphoglycerate kinase 2 [Source:HGNC Symbol;Acc:HGNC:8898]33806-1.055-0.5316Yes
111NOS1nitric oxide synthase 1 [Source:HGNC Symbol;Acc:HGNC:7872]33989-1.113-0.5228Yes
112SLC12A2solute carrier family 12 member 2 [Source:HGNC Symbol;Acc:HGNC:10911]34055-1.132-0.5107Yes
113ZC3H14zinc finger CCCH-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20509]34170-1.167-0.4995Yes
114NF2neurofibromin 2 [Source:HGNC Symbol;Acc:HGNC:7773]35116-1.578-0.5057Yes
115DBF4DBF4 zinc finger [Source:HGNC Symbol;Acc:HGNC:17364]35128-1.584-0.4866Yes
116GSG1germ cell associated 1 [Source:HGNC Symbol;Acc:HGNC:19716]35210-1.633-0.4688Yes
117HSPA2heat shock protein family A (Hsp70) member 2 [Source:HGNC Symbol;Acc:HGNC:5235]35350-1.702-0.4517Yes
118KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]35561-1.824-0.4350Yes
119CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]35605-1.855-0.4134Yes
120GMCL1germ cell-less 1, spermatogenesis associated [Source:HGNC Symbol;Acc:HGNC:23843]35608-1.857-0.3907Yes
121EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]35653-1.889-0.3687Yes
122NPHP1nephrocystin 1 [Source:HGNC Symbol;Acc:HGNC:7905]35762-1.973-0.3475Yes
123IFT88intraflagellar transport 88 [Source:HGNC Symbol;Acc:HGNC:20606]35765-1.974-0.3233Yes
124CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]35787-1.989-0.2995Yes
125RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35922-2.100-0.2774Yes
126TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]36013-2.163-0.2533Yes
127BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36101-2.242-0.2281Yes
128NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36160-2.294-0.2016Yes
129NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36164-2.301-0.1735Yes
130TOPBP1DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]36291-2.418-0.1472Yes
131PCSK4proprotein convertase subtilisin/kexin type 4 [Source:HGNC Symbol;Acc:HGNC:8746]36306-2.431-0.1178Yes
132HSPA4Lheat shock protein family A (Hsp70) member 4 like [Source:HGNC Symbol;Acc:HGNC:17041]36392-2.539-0.0890Yes
133STRBPspermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]36395-2.541-0.0579Yes
134TNNI3troponin I3, cardiac type [Source:HGNC Symbol;Acc:HGNC:11947]36431-2.591-0.0271Yes
135LPIN1lipin 1 [Source:HGNC Symbol;Acc:HGNC:13345]36952-3.6590.0037Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_SPERMATOGENESIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_SPERMATOGENESIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_SPERMATOGENESIS