Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.59810156
Normalized Enrichment Score (NES)1.394619
Nominal p-value0.022624435
FDR q-value0.02996484
FWER p-Value0.09
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]144.7460.0693Yes
2PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]264.5300.1354Yes
3ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]663.9380.1922Yes
4FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1093.5520.2431Yes
5SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1183.4500.2936Yes
6JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1253.4240.3436Yes
7SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1493.2740.3910Yes
8SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]2003.0390.4343Yes
9TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]3492.4750.4666Yes
10ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]3792.4110.5012Yes
11SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]6261.8780.5221Yes
12RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]7731.6570.5425Yes
13UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]12611.2450.5476Yes
14BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]13551.1760.5623Yes
15TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]16681.0390.5692Yes
16NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]20540.8780.5716Yes
17HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]25360.7140.5691Yes
18THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]26070.6930.5774Yes
19ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]26530.6780.5861Yes
20PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]29640.5980.5866Yes
21PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]30160.5860.5938Yes
22SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]31580.5550.5981Yes
23SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]37000.4410.5900No
24CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]43580.3300.5771No
25CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]44510.3160.5792No
26XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]47900.2660.5740No
27CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]97740.0000.4395No
28CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]128510.0000.3564No
29TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]136520.0000.3348No
30NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]193240.0000.1817No
31LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]201930.0000.1583No
32IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]204680.0000.1509No
33BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]27518-0.008-0.0394No
34SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]27624-0.024-0.0418No
35ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]27833-0.050-0.0467No
36FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]28151-0.087-0.0540No
37SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]28341-0.112-0.0575No
38MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28801-0.163-0.0675No
39WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]29677-0.275-0.0870No
40FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]30181-0.334-0.0957No
41LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30955-0.446-0.1101No
42PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]31135-0.472-0.1080No
43SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]31223-0.488-0.1032No
44APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]31295-0.499-0.0978No
45ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]31339-0.504-0.0915No
46RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]32178-0.647-0.1047No
47BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]32788-0.790-0.1095No
48TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]33740-1.042-0.1199No
49HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]34019-1.120-0.1110No
50SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]35515-1.800-0.1249No
51TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]35868-2.055-0.1043No
52SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36388-2.534-0.0811No
53KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36885-3.397-0.0447No
54BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36888-3.4200.0055No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING