Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_GAQ_versus_WT_NA.greenbergcls.cls
#WT_GAQ_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_UNFOLDED_PROTEIN_RESPONSE
Enrichment Score (ES)0.5621847
Normalized Enrichment Score (NES)1.4546539
Nominal p-value0.0
FDR q-value0.023892213
FWER p-Value0.057
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]214.6390.0479Yes
2NABP1nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]2992.6040.0676Yes
3DNAJB9DnaJ heat shock protein family (Hsp40) member B9 [Source:HGNC Symbol;Acc:HGNC:6968]3042.5880.0946Yes
4RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]4012.3570.1166Yes
5CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]4752.1520.1371Yes
6HERPUD1homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]4792.1460.1595Yes
7ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4962.1020.1810Yes
8SRPRASRP receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:11307]5242.0390.2016Yes
9HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]5412.0240.2223Yes
10FUSFUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]6601.8100.2380Yes
11ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]7911.6390.2516Yes
12WFS1wolframin ER transmembrane glycoprotein [Source:HGNC Symbol;Acc:HGNC:12762]8941.5300.2649Yes
13SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]9131.5100.2801Yes
14YWHAZtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]9211.5010.2956Yes
15SDAD1SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]10041.4280.3083Yes
16DCP2decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]10341.4100.3223Yes
17ATF4activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]10651.3880.3360Yes
18CEBPBCCAAT enhancer binding protein beta [Source:HGNC Symbol;Acc:HGNC:1834]11501.3270.3476Yes
19DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]11921.2970.3600Yes
20LSM1LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]12541.2520.3715Yes
21TATDN2TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]13041.2110.3828Yes
22EXOSC1exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]13241.1970.3948Yes
23EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]16281.0550.3976Yes
24SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]17141.0190.4060Yes
25NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]17361.0100.4160Yes
26SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]17680.9980.4255Yes
27DCP1Adecapping mRNA 1A [Source:HGNC Symbol;Acc:HGNC:18714]17700.9980.4359Yes
28CALRcalreticulin [Source:HGNC Symbol;Acc:HGNC:1455]18580.9630.4437Yes
29SRPRBSRP receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:24085]19040.9430.4523Yes
30HYOU1hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931]20030.8980.4590Yes
31NOP14NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]20360.8860.4674Yes
32EXOSC2exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]21010.8570.4746Yes
33BAG3BAG cochaperone 3 [Source:HGNC Symbol;Acc:HGNC:939]22520.8000.4790Yes
34IARS1isoleucyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:5330]23090.7840.4856Yes
35MTHFD2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434]25040.7220.4879Yes
36TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]25190.7180.4951Yes
37KIF5Bkinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]25850.6980.5006Yes
38CXXC1CXXC finger protein 1 [Source:HGNC Symbol;Acc:HGNC:24343]27270.6560.5036Yes
39ZBTB17zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:HGNC:12936]27350.6540.5103Yes
40EIF4EBP1eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]27400.6530.5170Yes
41CNOT4CCR4-NOT transcription complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:7880]28290.6290.5212Yes
42LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]29780.5950.5234Yes
43YIF1AYip1 interacting factor homolog A, membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:16688]29830.5940.5295Yes
44DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]32880.5250.5268Yes
45TTC37tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]33170.5200.5314Yes
46PDIA5protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]33350.5150.5364Yes
47EDC4enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]33850.5030.5403Yes
48EXOSC10exosome component 10 [Source:HGNC Symbol;Acc:HGNC:9138]34060.4970.5450Yes
49SPCS1signal peptidase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23401]35870.4640.5449Yes
50EIF4G1eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]36400.4520.5483Yes
51EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]36510.4500.5527Yes
52HSPA9heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]37600.4320.5543Yes
53ARFGAP1ADP ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]37730.4300.5585Yes
54CNOT6CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]38100.4220.5619Yes
55BANF1BAF nuclear assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]40280.3850.5601Yes
56GEMIN4gem nuclear organelle associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]40950.3750.5622Yes
57NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]44740.3140.5552No
58SSR1signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323]44780.3120.5584No
59SEC11ASEC11 homolog A, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:17718]46190.2920.5577No
60NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]51530.2090.5455No
61XPOTexportin for tRNA [Source:HGNC Symbol;Acc:HGNC:12826]51550.2080.5476No
62SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]51750.2050.5492No
63EXOSC4exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189]52100.2000.5504No
64DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]54850.1570.5446No
65CNOT2CCR4-NOT transcription complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:7878]55280.1500.5451No
66NHP2NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377]55660.1440.5456No
67EIF4A2eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]56990.1280.5433No
68DDX10DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735]57400.1230.5435No
69NFYAnuclear transcription factor Y subunit alpha [Source:HGNC Symbol;Acc:HGNC:7804]59950.0880.5376No
70EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]61580.0710.5339No
71ATF6activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]62260.0610.5328No
72TSPYL2TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]63810.0410.5290No
73SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]64080.0380.5287No
74POP4POP4 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30081]64450.0340.5281No
75SEC31ASEC31 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:17052]65550.0200.5254No
76PDIA6protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]66880.0050.5218No
77IGFBP1insulin like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]120260.0000.3775No
78CCL2C-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]229270.0000.0827No
79PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]27589-0.019-0.0431No
80EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]27679-0.031-0.0452No
81RPS14ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]28204-0.094-0.0584No
82STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]28211-0.096-0.0575No
83VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]28797-0.162-0.0717No
84DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]29091-0.200-0.0775No
85HSP90B1heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]29162-0.208-0.0772No
86MTREXMtr4 exosome RNA helicase [Source:HGNC Symbol;Acc:HGNC:18734]29240-0.217-0.0770No
87GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]29385-0.235-0.0785No
88XBP1X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]29415-0.240-0.0767No
89EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]29767-0.284-0.0833No
90PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]30434-0.369-0.0974No
91FKBP14FKBP prolyl isomerase 14 [Source:HGNC Symbol;Acc:HGNC:18625]30595-0.392-0.0976No
92EIF2AK3eukaryotic translation initiation factor 2 alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:3255]30742-0.414-0.0973No
93ALDH18A1aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722]30845-0.429-0.0955No
94CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]30947-0.445-0.0936No
95ATP6V0D1ATPase H+ transporting V0 subunit d1 [Source:HGNC Symbol;Acc:HGNC:13724]31130-0.470-0.0936No
96PAIP1poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16945]31269-0.495-0.0922No
97KDELR3KDEL endoplasmic reticulum protein retention receptor 3 [Source:HGNC Symbol;Acc:HGNC:6306]31503-0.531-0.0929No
98SLC30A5solute carrier family 30 member 5 [Source:HGNC Symbol;Acc:HGNC:19089]31538-0.537-0.0883No
99EXOC2exocyst complex component 2 [Source:HGNC Symbol;Acc:HGNC:24968]32403-0.699-0.1043No
100KHSRPKH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]32961-0.832-0.1107No
101EEF2eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]32970-0.834-0.1022No
102IMP3IMP U3 small nucleolar ribonucleoprotein 3 [Source:HGNC Symbol;Acc:HGNC:14497]33328-0.931-0.1021No
103TUBB2Atubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]33388-0.947-0.0938No
104CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]33639-1.014-0.0900No
105DCTN1dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]33712-1.036-0.0811No
106PARNpoly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]34572-1.320-0.0905No
107NFYBnuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805]34635-1.342-0.0782No
108ERN1endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]35015-1.526-0.0725No
109EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]35126-1.583-0.0589No
110H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]35698-1.925-0.0543No
111EDEM1ER degradation enhancing alpha-mannosidase like protein 1 [Source:HGNC Symbol;Acc:HGNC:18967]36129-2.262-0.0422No
112ERO1Aendoplasmic reticulum oxidoreductase 1 alpha [Source:HGNC Symbol;Acc:HGNC:13280]36297-2.424-0.0214No
113WIPI1WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]37039-4.1000.0014No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UNFOLDED_PROTEIN_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UNFOLDED_PROTEIN_RESPONSE