Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetCHR1Q25
Enrichment Score (ES)0.4142143
Normalized Enrichment Score (NES)1.1197808
Nominal p-value0.10606061
FDR q-value0.6361125
FWER p-Value0.995
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR1Q25   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RGS16regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]954.1280.0415Yes
2TOR3Atorsin family 3 member A [Source:HGNC Symbol;Acc:HGNC:11997]1014.0900.0850Yes
3TOR1AIP2torsin 1A interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:24055]1763.6160.1215Yes
4TOR1AIP1torsin 1A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29456]2913.0650.1511Yes
5STX6syntaxin 6 [Source:HGNC Symbol;Acc:HGNC:11441]5162.3100.1697Yes
6LAMC1laminin subunit gamma 1 [Source:HGNC Symbol;Acc:HGNC:6492]5302.2920.1938Yes
7SMG7SMG7 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]6212.1110.2139Yes
8SERPINC1serpin family C member 1 [Source:HGNC Symbol;Acc:HGNC:775]6682.0360.2343Yes
9RC3H1ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]7091.9650.2542Yes
10IER5immediate early response 5 [Source:HGNC Symbol;Acc:HGNC:5393]8381.7410.2693Yes
11COP1COP1 E3 ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:17440]10931.4790.2782Yes
12SWT1SWT1 RNA endoribonuclease homolog [Source:HGNC Symbol;Acc:HGNC:16785]11911.3930.2905Yes
13GAS5growth arrest specific 5 [Source:HGNC Symbol;Acc:HGNC:16355]12211.3740.3043Yes
14EIF1P3eukaryotic translation initiation factor 1 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:49616]14521.2080.3110Yes
15NDUFAF4P4NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:44543]15091.1710.3220Yes
16ENTR1P2ENTR1 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39164]16001.1190.3315Yes
17RPL30P1ribosomal protein L30 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:36642]16541.0850.3416Yes
18CACYBPcalcyclin binding protein [Source:HGNC Symbol;Acc:HGNC:30423]16631.0780.3529Yes
19ARPC5actin related protein 2/3 complex subunit 5 [Source:HGNC Symbol;Acc:HGNC:708]18011.0110.3600Yes
20TRMT1LtRNA methyltransferase 1 like [Source:HGNC Symbol;Acc:HGNC:16782]20380.9040.3632Yes
21NIBAN1niban apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:16784]21010.8780.3709Yes
22RGS8regulator of G protein signaling 8 [Source:HGNC Symbol;Acc:HGNC:16810]21160.8700.3798Yes
23FTH1P25ferritin heavy chain 1 pseudogene 25 [Source:HGNC Symbol;Acc:HGNC:37643]24390.7560.3792Yes
24ABL2ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]25260.7280.3846Yes
25NMNAT2nicotinamide nucleotide adenylyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16789]25930.7020.3903Yes
26MEF2AP1myocyte enhancer factor 2A pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:6994]28400.6250.3903Yes
27NPLN-acetylneuraminate pyruvate lyase [Source:HGNC Symbol;Acc:HGNC:16781]29380.5940.3940Yes
28AXDND1axonemal dynein light chain domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26564]29390.5940.4004Yes
29KLHL20kelch like family member 20 [Source:HGNC Symbol;Acc:HGNC:25056]30780.5630.4026Yes
30NCF2neutrophil cytosolic factor 2 [Source:HGNC Symbol;Acc:HGNC:7661]30840.5610.4085Yes
31FAM20BFAM20B glycosaminoglycan xylosylkinase [Source:HGNC Symbol;Acc:HGNC:23017]30930.5590.4142Yes
32TDRD5tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614]38750.3850.3972No
33RPSAP16ribosomal protein SA pseudogene 16 [Source:HGNC Symbol;Acc:HGNC:35478]40300.3540.3968No
34BANF1P4BANF1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:43884]40430.3520.4002No
35SETP10SET pseudogene 10 [Source:HGNC Symbol;Acc:HGNC:42929]40770.3470.4030No
36RASAL2RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]44270.2820.3966No
37TNNtenascin N [Source:HGNC Symbol;Acc:HGNC:22942]47420.2290.3905No
38ZBTB37zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]50860.1790.3832No
39MRPS14mitochondrial ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:14049]54190.1310.3756No
40LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]59290.0640.3625No
41CEP350centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]59820.0560.3617No
42TNRtenascin R [Source:HGNC Symbol;Acc:HGNC:11953]61000.0390.3589No
43COX5BP8cytochrome c oxidase subunit 5B pseudogene 8 [Source:HGNC Symbol;Acc:HGNC:39083]61620.0290.3576No
44PTPN2P1PTPN2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:9653]62140.0210.3564No
45PAPPA2pappalysin 2 [Source:HGNC Symbol;Acc:HGNC:14615]62150.0210.3567No
46HMCN1hemicentin 1 [Source:HGNC Symbol;Acc:HGNC:19194]62930.0110.3547No
47ANGPTL1angiopoietin like 1 [Source:HGNC Symbol;Acc:HGNC:489]69840.0000.3360No
48LINC01350long intergenic non-protein coding RNA 1350 [Source:HGNC Symbol;Acc:HGNC:50575]70040.0000.3355No
49LINC01344long intergenic non-protein coding RNA 1344 [Source:HGNC Symbol;Acc:HGNC:50554]70090.0000.3354No
50GAS5-AS1GAS5 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44119]71540.0000.3315No
51LINC01645long intergenic non-protein coding RNA 1645 [Source:HGNC Symbol;Acc:HGNC:52432]72740.0000.3283No
52LINC01633long intergenic non-protein coding RNA 1633 [Source:HGNC Symbol;Acc:HGNC:52420]72970.0000.3277No
53TEDDM1transmembrane epididymal protein 1 [Source:HGNC Symbol;Acc:HGNC:30233]73120.0000.3273No
54LINC01699long intergenic non-protein coding RNA 1699 [Source:HGNC Symbol;Acc:HGNC:52487]73590.0000.3261No
55LINC01657long intergenic non-protein coding RNA 1657 [Source:HGNC Symbol;Acc:HGNC:52445]73940.0000.3251No
56LINC01686long intergenic non-protein coding RNA 1686 [Source:HGNC Symbol;Acc:HGNC:27643]74160.0000.3246No
57LINC01688long intergenic non-protein coding RNA 1688 [Source:HGNC Symbol;Acc:HGNC:52475]74180.0000.3245No
58BRINP2BMP/retinoic acid inducible neural specific 2 [Source:HGNC Symbol;Acc:HGNC:13746]75360.0000.3214No
59ANKRD45ankyrin repeat domain 45 [Source:HGNC Symbol;Acc:HGNC:24786]76960.0000.3171No
60SCARNA3small Cajal body-specific RNA 3 [Source:HGNC Symbol;Acc:HGNC:32577]78120.0000.3140No
61RASAL2-AS1RASAL2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44170]85610.0000.2937No
62KIAA1614-AS1KIAA1614 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:50644]86430.0000.2915No
63RNU2-12PRNA, U2 small nuclear 12, pseudogene [Source:HGNC Symbol;Acc:HGNC:48505]87520.0000.2886No
64TNFSF4TNF superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:11934]88080.0000.2871No
65RNU6-152PRNA, U6 small nuclear 152, pseudogene [Source:HGNC Symbol;Acc:HGNC:47115]89420.0000.2835No
66SMG7-AS1SMG7 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:24518]91570.0000.2777No
67MIR4424microRNA 4424 [Source:HGNC Symbol;Acc:HGNC:41805]91880.0000.2769No
68C1orf220chromosome 1 putative open reading frame 220 [Source:HGNC Symbol;Acc:HGNC:33805]104200.0000.2436No
69MORF4L1P7mortality factor 4 like 1 pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:39259]111640.0000.2235No
70RN7SL654PRNA, 7SL, cytoplasmic 654, pseudogene [Source:HGNC Symbol;Acc:HGNC:46670]112420.0000.2214No
71RPS29P4ribosomal protein S29 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:35908]115350.0000.2135No
72NPHS2NPHS2 stomatin family member, podocin [Source:HGNC Symbol;Acc:HGNC:13394]116180.0000.2113No
73MCRIP2P2MAPK regulated corepressor interacting protein 2 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:49631]116230.0000.2112No
74TNFSF18TNF superfamily member 18 [Source:HGNC Symbol;Acc:HGNC:11932]124490.0000.1888No
75GS1-279B7.1microtubule associated protein 1 light chain 3 beta pseudogene [Source:NCBI gene (formerly Entrezgene);Acc:100288079]128880.0000.1770No
76LINC00272long intergenic non-protein coding RNA 272 [Source:HGNC Symbol;Acc:HGNC:26898]132470.0000.1673No
77OVAALovarian adenocarcinoma amplified long non-coding RNA [Source:HGNC Symbol;Acc:HGNC:49422]134870.0000.1608No
78TEX50testis expressed 50 [Source:HGNC Symbol;Acc:HGNC:52382]151060.0000.1170No
79TEX35testis expressed 35 [Source:HGNC Symbol;Acc:HGNC:25366]151300.0000.1164No
80RNU7-13PRNA, U7 small nuclear 13 pseudogene [Source:HGNC Symbol;Acc:HGNC:34109]152110.0000.1142No
81CLEC20AC-type lectin domain containing 20A [Source:HGNC Symbol;Acc:HGNC:34521]155240.0000.1058No
82SNORA63small nucleolar RNA, H/ACA box 63 [Source:HGNC Symbol;Acc:HGNC:10106]161270.0000.0895No
83RGSL1regulator of G protein signaling like 1 [Source:HGNC Symbol;Acc:HGNC:18636]162000.0000.0875No
84YPEL5P1YPEL5 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:50555]165380.0000.0784No
85RALGPS2Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]171830.0000.0610No
86SLC9C2solute carrier family 9 member C2 (putative) [Source:HGNC Symbol;Acc:HGNC:28664]174500.0000.0538No
87RN7SKP229RN7SK pseudogene 229 [Source:HGNC Symbol;Acc:HGNC:45953]180330.0000.0380No
88EIF4A1P11eukaryotic translation initiation factor 4A1 pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:37932]196030.000-0.0044No
89LINC01741long intergenic non-protein coding RNA 1741 [Source:HGNC Symbol;Acc:HGNC:52529]197250.000-0.0077No
90LINC01732long intergenic non-protein coding RNA 1732 [Source:HGNC Symbol;Acc:HGNC:52520]197450.000-0.0082No
91RN7SKP160RN7SK pseudogene 160 [Source:HGNC Symbol;Acc:HGNC:45884]202180.000-0.0210No
92RNU5F-2PRNA, U5F small nuclear 2, pseudogene [Source:HGNC Symbol;Acc:HGNC:42510]207840.000-0.0363No
93MIR3121microRNA 3121 [Source:HGNC Symbol;Acc:HGNC:38259]208440.000-0.0379No
94ZNF648zinc finger protein 648 [Source:HGNC Symbol;Acc:HGNC:18190]211890.000-0.0472No
95MIR488microRNA 488 [Source:HGNC Symbol;Acc:HGNC:32073]214440.000-0.0541No
96TNR-IT1TNR intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41391]217660.000-0.0628No
97KIAA0040KIAA0040 [Source:HGNC Symbol;Acc:HGNC:28950]225220.000-0.0832No
98RNU7-183PRNA, U7 small nuclear 183 pseudogene [Source:HGNC Symbol;Acc:HGNC:45717]229260.000-0.0941No
99LHX4LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:21734]229510.000-0.0948No
100RABGAP1L-IT1RABGAP1L intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41471]230930.000-0.0986No
101KRT18P28keratin 18 pseudogene 28 [Source:HGNC Symbol;Acc:HGNC:33397]232960.000-0.1040No
102RC3H1-IT1RC3H1 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41496]235650.000-0.1113No
103FAM163Afamily with sequence similarity 163 member A [Source:HGNC Symbol;Acc:HGNC:28274]244970.000-0.1365No
104RNU6-307PRNA, U6 small nuclear 307, pseudogene [Source:HGNC Symbol;Acc:HGNC:47270]245100.000-0.1368No
105RN7SL230PRNA, 7SL, cytoplasmic 230, pseudogene [Source:HGNC Symbol;Acc:HGNC:46246]246170.000-0.1397No
106KIAA1614KIAA1614 [Source:HGNC Symbol;Acc:HGNC:29327]257340.000-0.1699No
107RNA5SP70RNA, 5S ribosomal pseudogene 70 [Source:HGNC Symbol;Acc:HGNC:42847]258730.000-0.1736No
108RNA5SP72RNA, 5S ribosomal pseudogene 72 [Source:HGNC Symbol;Acc:HGNC:42849]258780.000-0.1737No
109RNA5SP68RNA, 5S ribosomal pseudogene 68 [Source:HGNC Symbol;Acc:HGNC:42845]259430.000-0.1755No
110RNA5SP67RNA, 5S ribosomal pseudogene 67 [Source:HGNC Symbol;Acc:HGNC:42844]259440.000-0.1755No
111RNA5SP69RNA, 5S ribosomal pseudogene 69 [Source:HGNC Symbol;Acc:HGNC:42846]259470.000-0.1755No
112APOBEC4apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 [Source:HGNC Symbol;Acc:HGNC:32152]261380.000-0.1807No
113AL133383.1novel transcript261530.000-0.1811No
114ASTN1astrotactin 1 [Source:HGNC Symbol;Acc:HGNC:773]261870.000-0.1819No
115TEDDM2Ptransmembrane epididymal protein 2, pseudogene [Source:HGNC Symbol;Acc:HGNC:42447]263270.000-0.1857No
116PTP4A1P7PTP4A1 pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:41934]27360-0.043-0.2132No
117RNU6-41PRNA, U6 small nuclear 41, pseudogene [Source:HGNC Symbol;Acc:HGNC:34247]27476-0.057-0.2157No
118EDEM3ER degradation enhancing alpha-mannosidase like protein 3 [Source:HGNC Symbol;Acc:HGNC:16787]28392-0.171-0.2386No
119COLGALT2collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16790]28552-0.193-0.2409No
120HMGN1P4high mobility group nucleosome binding domain 1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:39336]30289-0.441-0.2832No
121GOT2P2glutamic-oxaloacetic transaminase 2 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:4435]30368-0.452-0.2805No
122RNF2ring finger protein 2 [Source:HGNC Symbol;Acc:HGNC:10061]30498-0.471-0.2789No
123RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]30713-0.508-0.2793No
124HNRNPA1P54heterogeneous nuclear ribonucleoprotein A1 pseudogene 54 [Source:HGNC Symbol;Acc:HGNC:48784]30907-0.541-0.2787No
125RPS29P5ribosomal protein S29 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:35584]31000-0.556-0.2753No
126SEC16BSEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]31695-0.689-0.2867No
127RPL5P5ribosomal protein L5 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:35564]32090-0.783-0.2891No
128RABGAP1LRAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]32131-0.793-0.2817No
129QSOX1quiescin sulfhydryl oxidase 1 [Source:HGNC Symbol;Acc:HGNC:9756]32358-0.848-0.2788No
130RGL1ral guanine nucleotide dissociation stimulator like 1 [Source:HGNC Symbol;Acc:HGNC:30281]32369-0.851-0.2700No
131GPR52G protein-coupled receptor 52 [Source:HGNC Symbol;Acc:HGNC:4508]32624-0.909-0.2671No
132ACBD6acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]32704-0.934-0.2593No
133DHX9DExH-box helicase 9 [Source:HGNC Symbol;Acc:HGNC:2750]33074-1.040-0.2582No
134TSEN15tRNA splicing endonuclease subunit 15 [Source:HGNC Symbol;Acc:HGNC:16791]33782-1.263-0.2639No
135PRDX6peroxiredoxin 6 [Source:HGNC Symbol;Acc:HGNC:16753]34302-1.457-0.2624No
136SOAT1sterol O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:11177]34533-1.555-0.2520No
137VDAC1P4voltage dependent anion channel 1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:12675]34962-1.752-0.2449No
138MR1major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:HGNC:4975]35509-2.087-0.2374No
139CENPLcentromere protein L [Source:HGNC Symbol;Acc:HGNC:17879]35664-2.208-0.2181No
140IVNS1ABPinfluenza virus NS1A binding protein [Source:HGNC Symbol;Acc:HGNC:16951]35880-2.389-0.1984No
141DARS2aspartyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25538]36140-2.657-0.1771No
142XPR1xenotropic and polytropic retrovirus receptor 1 [Source:HGNC Symbol;Acc:HGNC:12827]36185-2.706-0.1494No
143CACNA1Ecalcium voltage-gated channel subunit alpha1 E [Source:HGNC Symbol;Acc:HGNC:1392]36711-3.365-0.1277No
144GLULglutamate-ammonia ligase [Source:HGNC Symbol;Acc:HGNC:4341]36967-3.990-0.0920No
145SHCBP1LSHC binding and spindle associated 1 like [Source:HGNC Symbol;Acc:HGNC:16788]37036-4.349-0.0475No
146C1orf21chromosome 1 open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:15494]37071-4.5860.0005No
Table: GSEA details [plain text format]



Fig 2: CHR1Q25   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR1Q25: Random ES distribution   
Gene set null distribution of ES for CHR1Q25