Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetBMI1_DN_MEL18_DN.V1_UP
Enrichment Score (ES)0.520107
Normalized Enrichment Score (NES)1.3998549
Nominal p-value0.016129032
FDR q-value0.07926211
FWER p-Value0.19
Table: GSEA Results Summary



Fig 1: Enrichment plot: BMI1_DN_MEL18_DN.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]14.9750.0316Yes
2IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]24.9720.0632Yes
3VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]254.8040.0932Yes
4FOSL1FOS like 1, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:13718]304.7610.1233Yes
5PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]404.6710.1528Yes
6SLC7A11solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]754.2570.1789Yes
7ITGA5integrin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6141]864.1880.2053Yes
8PIM1Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]894.1630.2317Yes
9ZC3H12Azinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]1203.9660.2561Yes
10GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]1993.4930.2762Yes
11EHD1EH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:3242]2073.4240.2978Yes
12C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]2133.4010.3193Yes
13ABCA1ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]2343.2850.3396Yes
14EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]2423.2620.3602Yes
15CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]2993.0080.3778Yes
16PIEZO1piezo type mechanosensitive ion channel component 1 [Source:HGNC Symbol;Acc:HGNC:28993]3322.8700.3952Yes
17ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4092.5830.4095Yes
18CDC42EP2CDC42 effector protein 2 [Source:HGNC Symbol;Acc:HGNC:16263]4792.3960.4229Yes
19RUSC2RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]5142.3120.4367Yes
20CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]5252.3030.4510Yes
21CHST11carbohydrate sulfotransferase 11 [Source:HGNC Symbol;Acc:HGNC:17422]7641.8730.4565Yes
22NRP2neuropilin 2 [Source:HGNC Symbol;Acc:HGNC:8005]7821.8420.4678Yes
23FAPfibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]8841.6830.4757Yes
24TNIP3TNFAIP3 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:19315]9841.5780.4831Yes
25SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]12661.3380.4840Yes
26KCNN4potassium calcium-activated channel subfamily N member 4 [Source:HGNC Symbol;Acc:HGNC:6293]14231.2280.4876Yes
27LCP1lymphocyte cytosolic protein 1 [Source:HGNC Symbol;Acc:HGNC:6528]14861.1830.4934Yes
28APBB2amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]15521.1480.4990Yes
29SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]16511.0860.5032Yes
30BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]16741.0680.5094Yes
31INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]16761.0670.5162Yes
32TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]17711.0220.5201Yes
33MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]22340.8230.5128No
34GFPT2glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]22380.8210.5180No
35FJX1four-jointed box kinase 1 [Source:HGNC Symbol;Acc:HGNC:17166]23800.7710.5191No
36HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]25790.7080.5182No
37MICALL1MICAL like 1 [Source:HGNC Symbol;Acc:HGNC:29804]29000.6080.5134No
38DUSP10dual specificity phosphatase 10 [Source:HGNC Symbol;Acc:HGNC:3065]29860.5820.5148No
39BST1bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]33170.5030.5091No
40ZEB2zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]33210.5020.5122No
41TNFRSF8TNF receptor superfamily member 8 [Source:HGNC Symbol;Acc:HGNC:11923]34010.4820.5131No
42KLF7Kruppel like factor 7 [Source:HGNC Symbol;Acc:HGNC:6350]37240.4150.5070No
43TFECtranscription factor EC [Source:HGNC Symbol;Acc:HGNC:11754]39050.3780.5046No
44GAB2GRB2 associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]39090.3780.5069No
45VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]39150.3760.5091No
46IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]41930.3250.5037No
47TNFAIP6TNF alpha induced protein 6 [Source:HGNC Symbol;Acc:HGNC:11898]41950.3240.5057No
48TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]42210.3190.5071No
49SIK1salt inducible kinase 1 [Source:HGNC Symbol;Acc:HGNC:11142]43190.2990.5064No
50F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]44310.2820.5052No
51NKAIN1sodium/potassium transporting ATPase interacting 1 [Source:HGNC Symbol;Acc:HGNC:25743]44890.2710.5053No
52PODXLpodocalyxin like [Source:HGNC Symbol;Acc:HGNC:9171]45790.2560.5046No
53ARNTL2aryl hydrocarbon receptor nuclear translocator like 2 [Source:HGNC Symbol;Acc:HGNC:18984]48100.2180.4997No
54TCIMtranscriptional and immune response regulator [Source:HGNC Symbol;Acc:HGNC:1357]51430.1700.4918No
55ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]53520.1400.4871No
56RREB1ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]54850.1220.4843No
57TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]54980.1210.4847No
58VNN1vanin 1 [Source:HGNC Symbol;Acc:HGNC:12705]58120.0810.4768No
59ITGB8integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]59640.0590.4730No
60ZNF639zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]63510.0010.4626No
61FGF21fibroblast growth factor 21 [Source:HGNC Symbol;Acc:HGNC:3678]69190.0000.4473No
62ABLIM3actin binding LIM protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29132]70610.0000.4434No
63GREM1gremlin 1, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:2001]82150.0000.4122No
64TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]88120.0000.3961No
65MAP3K7CLMAP3K7 C-terminal like [Source:HGNC Symbol;Acc:HGNC:16457]91540.0000.3869No
66VLDLRvery low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:12698]95490.0000.3762No
67TNFRSF9TNF receptor superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11924]98020.0000.3694No
68PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]99160.0000.3663No
69ADAM19ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]99270.0000.3661No
70ADAM12ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]99290.0000.3660No
71ADM2adrenomedullin 2 [Source:HGNC Symbol;Acc:HGNC:28898]111080.0000.3342No
72LRRC15leucine rich repeat containing 15 [Source:HGNC Symbol;Acc:HGNC:20818]113660.0000.3272No
73PTHLHparathyroid hormone like hormone [Source:HGNC Symbol;Acc:HGNC:9607]115980.0000.3209No
74TACR3tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]131660.0000.2785No
75COL13A1collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]155250.0000.2147No
76HTR1D5-hydroxytryptamine receptor 1D [Source:HGNC Symbol;Acc:HGNC:5289]155790.0000.2133No
77COL16A1collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]164260.0000.1904No
78GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]168310.0000.1794No
79TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170590.0000.1733No
80MGLLmonoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]170720.0000.1730No
81FAM189A1family with sequence similarity 189 member A1 [Source:HGNC Symbol;Acc:HGNC:29075]172300.0000.1687No
82HAPLN1hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:HGNC:2380]173250.0000.1662No
83MICAMHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090]175830.0000.1592No
84PAPPApappalysin 1 [Source:HGNC Symbol;Acc:HGNC:8602]177700.0000.1542No
85CDH13cadherin 13 [Source:HGNC Symbol;Acc:HGNC:1753]185980.0000.1318No
86BMP5bone morphogenetic protein 5 [Source:HGNC Symbol;Acc:HGNC:1072]189360.0000.1227No
87MMP7matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174]189610.0000.1220No
88CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]193090.0000.1126No
89CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]193180.0000.1124No
90SCML2Scm polycomb group protein like 2 [Source:HGNC Symbol;Acc:HGNC:10581]201580.0000.0897No
91CPA4carboxypeptidase A4 [Source:HGNC Symbol;Acc:HGNC:15740]232290.0000.0066No
92NPPBnatriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]234030.0000.0019No
93LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]234630.0000.0003No
94CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]242280.000-0.0203No
95LSAMPlimbic system associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]244330.000-0.0259No
96WNT5BWnt family member 5B [Source:HGNC Symbol;Acc:HGNC:16265]244560.000-0.0264No
97CLDN1claudin 1 [Source:HGNC Symbol;Acc:HGNC:2032]245580.000-0.0292No
98HAS2hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]246240.000-0.0309No
99PDCD1LG2programmed cell death 1 ligand 2 [Source:HGNC Symbol;Acc:HGNC:18731]252280.000-0.0473No
100PLAURplasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:HGNC:9053]253210.000-0.0498No
101ITGB6integrin subunit beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]260700.000-0.0700No
102ITGA3integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]260730.000-0.0701No
103PAGE1PAGE family member 1 [Source:HGNC Symbol;Acc:HGNC:4107]261600.000-0.0724No
104GDF5growth differentiation factor 5 [Source:HGNC Symbol;Acc:HGNC:4220]27813-0.098-0.1165No
105KRT75keratin 75 [Source:HGNC Symbol;Acc:HGNC:24431]28043-0.127-0.1219No
106TEKTEK receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11724]28170-0.141-0.1244No
107PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]29101-0.268-0.1478No
108ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]29179-0.279-0.1482No
109TUFT1tuftelin 1 [Source:HGNC Symbol;Acc:HGNC:12422]29456-0.320-0.1536No
110KMT2Alysine methyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:7132]29615-0.341-0.1557No
111STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]29695-0.353-0.1556No
112NT5E5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021]29797-0.367-0.1560No
113ADGBandroglobin [Source:HGNC Symbol;Acc:HGNC:21212]30009-0.398-0.1592No
114CSPG4chondroitin sulfate proteoglycan 4 [Source:HGNC Symbol;Acc:HGNC:2466]30034-0.402-0.1573No
115ADGRE5adhesion G protein-coupled receptor E5 [Source:HGNC Symbol;Acc:HGNC:1711]30355-0.450-0.1631No
116PIK3CGphosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:HGNC Symbol;Acc:HGNC:8978]30557-0.480-0.1654No
117STX1Asyntaxin 1A [Source:HGNC Symbol;Acc:HGNC:11433]30738-0.513-0.1671No
118INHBEinhibin subunit beta E [Source:HGNC Symbol;Acc:HGNC:24029]30759-0.516-0.1643No
119ASPHaspartate beta-hydroxylase [Source:HGNC Symbol;Acc:HGNC:757]30971-0.551-0.1665No
120SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]31466-0.640-0.1758No
121COL7A1collagen type VII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2214]32122-0.791-0.1885No
122P2RX5purinergic receptor P2X 5 [Source:HGNC Symbol;Acc:HGNC:8536]32506-0.880-0.1933No
123SLC22A4solute carrier family 22 member 4 [Source:HGNC Symbol;Acc:HGNC:10968]32613-0.906-0.1904No
124SLC6A9solute carrier family 6 member 9 [Source:HGNC Symbol;Acc:HGNC:11056]32698-0.932-0.1867No
125KCNN3potassium calcium-activated channel subfamily N member 3 [Source:HGNC Symbol;Acc:HGNC:6292]32938-0.998-0.1869No
126TRIOtrio Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12303]33674-1.228-0.1990No
127ARL4CADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]33990-1.339-0.1990No
128OGFRL1opioid growth factor receptor like 1 [Source:HGNC Symbol;Acc:HGNC:21378]34105-1.376-0.1933No
129JAG1jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188]34205-1.412-0.1870No
130CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34360-1.482-0.1818No
131C2CD2C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]34379-1.492-0.1728No
132LHFPL2LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]34819-1.680-0.1740No
133C2CD2LC2CD2 like [Source:HGNC Symbol;Acc:HGNC:29000]35167-1.859-0.1715No
134FADS3fatty acid desaturase 3 [Source:HGNC Symbol;Acc:HGNC:3576]35281-1.938-0.1623No
135TMEM51transmembrane protein 51 [Source:HGNC Symbol;Acc:HGNC:25488]35369-1.993-0.1519No
136KIF21Bkinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]35696-2.231-0.1466No
137ADMadrenomedullin [Source:HGNC Symbol;Acc:HGNC:259]36003-2.504-0.1389No
138CHST3carbohydrate sulfotransferase 3 [Source:HGNC Symbol;Acc:HGNC:1971]36333-2.866-0.1296No
139PLEKHO1pleckstrin homology domain containing O1 [Source:HGNC Symbol;Acc:HGNC:24310]36369-2.890-0.1122No
140ITGA4integrin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6140]36938-3.904-0.1028No
141ATP13A2ATPase cation transporting 13A2 [Source:HGNC Symbol;Acc:HGNC:30213]36970-4.002-0.0781No
142WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36989-4.089-0.0526No
143NAV2neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]37021-4.251-0.0264No
144ADRB2adrenoceptor beta 2 [Source:HGNC Symbol;Acc:HGNC:286]37052-4.4490.0010No
Table: GSEA details [plain text format]



Fig 2: BMI1_DN_MEL18_DN.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: BMI1_DN_MEL18_DN.V1_UP: Random ES distribution   
Gene set null distribution of ES for BMI1_DN_MEL18_DN.V1_UP