Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetCSR_LATE_UP.V1_UP
Enrichment Score (ES)-0.63288456
Normalized Enrichment Score (NES)-1.3657637
Nominal p-value0.0021413276
FDR q-value0.1326061
FWER p-Value0.718
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_LATE_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]254.8040.0236No
2PARP11poly(ADP-ribose) polymerase family member 11 [Source:HGNC Symbol;Acc:HGNC:1186]1313.9000.0404No
3CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]2993.0080.0511No
4TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]7221.9440.0495No
5WSB2WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]9201.6410.0524No
6EEF1E1eukaryotic translation elongation factor 1 epsilon 1 [Source:HGNC Symbol;Acc:HGNC:3212]10261.5250.0573No
7RPF2ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]10611.5000.0639No
8ASB6ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]14701.1910.0589No
9FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]16681.0750.0590No
10MT2Ametallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406]16891.0600.0638No
11GTF3C6general transcription factor IIIC subunit 6 [Source:HGNC Symbol;Acc:HGNC:20872]17011.0550.0688No
12EIF5Aeukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:HGNC:3300]18211.0010.0707No
13PSMD14proteasome 26S subunit, non-ATPase 14 [Source:HGNC Symbol;Acc:HGNC:16889]18520.9870.0748No
14ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]21390.8620.0714No
15MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]22340.8230.0730No
16HYPKhuntingtin interacting protein K [Source:HGNC Symbol;Acc:HGNC:18418]22600.8140.0765No
17PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]23010.7990.0794No
18EML1EMAP like 1 [Source:HGNC Symbol;Acc:HGNC:3330]23540.7810.0820No
19FARSBphenylalanyl-tRNA synthetase subunit beta [Source:HGNC Symbol;Acc:HGNC:17800]26070.6970.0786No
20LYARLy1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]29460.5910.0725No
21AHSA1activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]29810.5830.0745No
22SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]30640.5660.0751No
23MAPRE1microtubule associated protein RP/EB family member 1 [Source:HGNC Symbol;Acc:HGNC:6890]31620.5430.0753No
24ELOCelongin C [Source:HGNC Symbol;Acc:HGNC:11617]33400.4950.0730No
25DNAJB11DnaJ heat shock protein family (Hsp40) member B11 [Source:HGNC Symbol;Acc:HGNC:14889]36540.4280.0666No
26PSMD2proteasome 26S subunit, non-ATPase 2 [Source:HGNC Symbol;Acc:HGNC:9559]36610.4270.0686No
27HERC4HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:24521]36950.4210.0699No
28JPT1Jupiter microtubule associated homolog 1 [Source:HGNC Symbol;Acc:HGNC:14569]37260.4140.0711No
29PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]37520.4110.0725No
30TRPC4transient receptor potential cation channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:12336]38690.3860.0714No
31IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]40490.3510.0683No
32IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]41930.3250.0660No
33EIF3Beukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]43070.3010.0645No
34MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]43090.3000.0660No
35PDLIM5PDZ and LIM domain 5 [Source:HGNC Symbol;Acc:HGNC:17468]45530.2600.0607No
36CIAPIN1cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:28050]46580.2440.0591No
37NMBneuromedin B [Source:HGNC Symbol;Acc:HGNC:7842]50080.1900.0506No
38DRAP1DR1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:3019]51800.1650.0468No
39PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]52650.1530.0453No
40MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]53420.1420.0440No
41SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]53470.1400.0446No
42MYH1myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]55780.1120.0389No
43MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]57310.0920.0353No
44CYP4B1cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]57730.0860.0346No
45CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]59390.0630.0305No
46SMSspermine synthase [Source:HGNC Symbol;Acc:HGNC:11123]59760.0570.0298No
47METMET proto-oncogene, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7029]60620.0440.0277No
48MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]60660.0430.0278No
49NUP88nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]61640.0290.0253No
50NETO2neuropilin and tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:14644]72870.000-0.0050No
51GREM2gremlin 2, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:17655]82160.000-0.0302No
52CDH2cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]94660.000-0.0640No
53SSTR1somatostatin receptor 1 [Source:HGNC Symbol;Acc:HGNC:11330]115880.000-0.1214No
54IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]117300.000-0.1253No
55DCBLD1discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]120500.000-0.1339No
56TMEM130transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]134120.000-0.1708No
57KISS1KiSS-1 metastasis suppressor [Source:HGNC Symbol;Acc:HGNC:6341]142990.000-0.1947No
58MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155870.000-0.2296No
59BEX1brain expressed X-linked 1 [Source:HGNC Symbol;Acc:HGNC:1036]165230.000-0.2549No
60TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170590.000-0.2694No
61CXCL12C-X-C motif chemokine ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]187860.000-0.3162No
62NKX2-1NK2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11825]190580.000-0.3235No
63CXCL6C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]193040.000-0.3301No
64TRPC3transient receptor potential cation channel subfamily C member 3 [Source:HGNC Symbol;Acc:HGNC:12335]198990.000-0.3462No
65SLC16A5solute carrier family 16 member 5 [Source:HGNC Symbol;Acc:HGNC:10926]211630.000-0.3804No
66C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]216830.000-0.3945No
67KRT25keratin 25 [Source:HGNC Symbol;Acc:HGNC:30839]217090.000-0.3951No
68KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]217570.000-0.3964No
69SNORD22small nucleolar RNA, C/D box 22 [Source:HGNC Symbol;Acc:HGNC:10145]221040.000-0.4058No
70SAMD11sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28706]231210.000-0.4333No
71ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]258040.000-0.5059No
72ILF2interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]27365-0.044-0.5480No
73PRMT5protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:10894]27395-0.047-0.5485No
74TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]27454-0.055-0.5498No
75TPM2tropomyosin 2 [Source:HGNC Symbol;Acc:HGNC:12011]28017-0.125-0.5644No
76ARHGEF1Rho guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:681]28124-0.136-0.5666No
77UTP18UTP18 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]28770-0.223-0.5829No
78SERPINB7serpin family B member 7 [Source:HGNC Symbol;Acc:HGNC:13902]29768-0.363-0.6081No
79TEX30testis expressed 30 [Source:HGNC Symbol;Acc:HGNC:25188]29830-0.373-0.6079No
80NOC2LNOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:24517]30025-0.400-0.6111No
81YIPF3Yip1 domain family member 3 [Source:HGNC Symbol;Acc:HGNC:21023]30108-0.414-0.6112No
82HAUS2HAUS augmin like complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25530]30267-0.437-0.6133No
83MT1Lmetallothionein 1L, pseudogene [Source:HGNC Symbol;Acc:HGNC:7404]30276-0.438-0.6113No
84TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]30497-0.471-0.6149No
85KIFBPkinesin family binding protein [Source:HGNC Symbol;Acc:HGNC:23419]30529-0.477-0.6133No
86LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30540-0.478-0.6112No
87PGM2phosphoglucomutase 2 [Source:HGNC Symbol;Acc:HGNC:8906]30810-0.525-0.6158No
88TOMM34translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]31442-0.637-0.6297Yes
89FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]31463-0.639-0.6270Yes
90POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]31606-0.672-0.6274Yes
91COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31627-0.676-0.6246Yes
92PPP5Cprotein phosphatase 5 catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9322]31725-0.693-0.6237Yes
93NUDCnuclear distribution C, dynein complex regulator [Source:HGNC Symbol;Acc:HGNC:8045]31858-0.729-0.6236Yes
94MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]31897-0.736-0.6209Yes
95MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]31969-0.754-0.6190Yes
96RAD18RAD18 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:18278]31995-0.762-0.6158Yes
97NUDCD1NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]32008-0.765-0.6123Yes
98EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]32110-0.788-0.6111Yes
99PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]32111-0.788-0.6071Yes
100TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]32259-0.821-0.6069Yes
101YEATS4YEATS domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24859]32297-0.831-0.6037Yes
102CMC2C-X9-C motif containing 2 [Source:HGNC Symbol;Acc:HGNC:24447]32300-0.832-0.5996Yes
103DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]32439-0.866-0.5989Yes
104AP1S2adaptor related protein complex 1 subunit sigma 2 [Source:HGNC Symbol;Acc:HGNC:560]32460-0.870-0.5951Yes
105POLR3KRNA polymerase III subunit K [Source:HGNC Symbol;Acc:HGNC:14121]32583-0.900-0.5939Yes
106HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32784-0.959-0.5944Yes
107ITGA6integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]32808-0.965-0.5902Yes
108UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]32924-0.996-0.5883Yes
109MTHFD1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:7432]33056-1.035-0.5866Yes
110NDC1NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]33125-1.054-0.5831Yes
111CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33249-1.089-0.5809Yes
112SLC25A11solute carrier family 25 member 11 [Source:HGNC Symbol;Acc:HGNC:10981]33267-1.098-0.5759Yes
113SLF1SMC5-SMC6 complex localization factor 1 [Source:HGNC Symbol;Acc:HGNC:25408]33689-1.232-0.5810Yes
114CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33887-1.300-0.5798Yes
115FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]34079-1.367-0.5781Yes
116KATNAL1katanin catalytic subunit A1 like 1 [Source:HGNC Symbol;Acc:HGNC:28361]34092-1.371-0.5715Yes
117DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]34101-1.375-0.5648Yes
118FAM216Afamily with sequence similarity 216 member A [Source:HGNC Symbol;Acc:HGNC:30180]34165-1.396-0.5594Yes
119CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34194-1.408-0.5531Yes
120ACTL6Aactin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]34254-1.434-0.5474Yes
121CDC7cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]34380-1.492-0.5433Yes
122HMGB1high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]34443-1.518-0.5373Yes
123ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]34602-1.583-0.5336Yes
124CDK5cyclin dependent kinase 5 [Source:HGNC Symbol;Acc:HGNC:1774]34632-1.597-0.5263Yes
125KCNC4potassium voltage-gated channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:6236]34863-1.697-0.5240Yes
126LMNB2lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]34908-1.721-0.5165Yes
127ZNF367zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]34965-1.754-0.5091Yes
128MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35043-1.792-0.5022Yes
129FANCAFA complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]35160-1.856-0.4959Yes
130CTPS1CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]35341-1.973-0.4909Yes
131MAZMYC associated zinc finger protein [Source:HGNC Symbol;Acc:HGNC:6914]35620-2.171-0.4874Yes
132CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]35675-2.217-0.4777Yes
133S1PR1sphingosine-1-phosphate receptor 1 [Source:HGNC Symbol;Acc:HGNC:3165]35738-2.268-0.4679Yes
134ALKBH7alkB homolog 7 [Source:HGNC Symbol;Acc:HGNC:21306]35903-2.411-0.4602Yes
135CCDC34coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:HGNC:25079]35949-2.456-0.4490Yes
136TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]35965-2.473-0.4369Yes
137SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]36041-2.544-0.4261Yes
138EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36079-2.583-0.4141Yes
139POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36139-2.657-0.4023Yes
140GYS1glycogen synthase 1 [Source:HGNC Symbol;Acc:HGNC:4706]36231-2.748-0.3909Yes
141TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]36261-2.777-0.3776Yes
142PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]36266-2.780-0.3637Yes
143UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36279-2.795-0.3499Yes
144BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]36283-2.797-0.3359Yes
145GINS3GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]36287-2.804-0.3218Yes
146UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36296-2.816-0.3078Yes
147BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36304-2.820-0.2937Yes
148NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36418-2.951-0.2819Yes
149SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36430-2.964-0.2672Yes
150CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36469-2.992-0.2532Yes
151CLSPNclaspin [Source:HGNC Symbol;Acc:HGNC:19715]36509-3.035-0.2389Yes
152PAICSphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase [Source:HGNC Symbol;Acc:HGNC:8587]36556-3.101-0.2245Yes
153PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36576-3.129-0.2092Yes
154TCF19transcription factor 19 [Source:HGNC Symbol;Acc:HGNC:11629]36597-3.152-0.1938Yes
155FAM83Dfamily with sequence similarity 83 member D [Source:HGNC Symbol;Acc:HGNC:16122]36609-3.173-0.1781Yes
156KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36692-3.321-0.1636Yes
157ANLNanillin actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]36818-3.574-0.1489Yes
158CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]36855-3.645-0.1315Yes
159FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36876-3.698-0.1133Yes
160RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36891-3.747-0.0948Yes
161MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36917-3.817-0.0762Yes
162CHEK2checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]36929-3.880-0.0569Yes
163GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]36931-3.886-0.0373Yes
164HIP1huntingtin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:4913]36952-3.959-0.0179Yes
165TSPAN13tetraspanin 13 [Source:HGNC Symbol;Acc:HGNC:21643]37027-4.2770.0017Yes
Table: GSEA details [plain text format]



Fig 2: CSR_LATE_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_LATE_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for CSR_LATE_UP.V1_UP