Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.5015978
Normalized Enrichment Score (NES)1.3657645
Nominal p-value0.0
FDR q-value0.074739404
FWER p-Value0.231
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]524.5410.0227Yes
2GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]554.5110.0465Yes
3ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]694.3390.0692Yes
4ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]734.2880.0918Yes
5ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]784.2340.1141Yes
6GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]924.1510.1358Yes
7CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]1034.0850.1571Yes
8JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1463.8150.1762Yes
9BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]1743.6250.1947Yes
10SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1773.6050.2138Yes
11LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]2053.4450.2313Yes
12TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]2143.3970.2491Yes
13EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]2423.2620.2656Yes
14MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]2513.2320.2825Yes
15ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]2523.2260.2996Yes
16ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]2683.1320.3158Yes
17UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]2903.0670.3315Yes
18TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]3152.9460.3465Yes
19ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]5432.2490.3522Yes
20STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]5502.2370.3639Yes
21GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]5602.2210.3755Yes
22ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]5832.1640.3863Yes
23TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]5862.1610.3977Yes
24NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]5912.1570.4090Yes
25RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]6002.1440.4202Yes
26TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]7961.8120.4245Yes
27LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]9001.6630.4305Yes
28ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]10191.5340.4355Yes
29KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]10381.5140.4430Yes
30MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]10541.5020.4506Yes
31RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]10811.4880.4578Yes
32SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]12171.3780.4614Yes
33TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]16791.0660.4546Yes
34TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]17711.0220.4575Yes
35BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]18121.0050.4617Yes
36WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]18810.9740.4651Yes
37FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]19640.9310.4678Yes
38ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]20410.9030.4705Yes
39UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]21600.8530.4718Yes
40BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]21710.8470.4761Yes
41NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]21770.8450.4804Yes
42RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]22000.8380.4842Yes
43C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]23600.7790.4841Yes
44MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]24620.7450.4853Yes
45ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]25460.7160.4868Yes
46MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]25770.7080.4898Yes
47MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]26060.6970.4927Yes
48APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]26470.6840.4952Yes
49LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]27140.6650.4970Yes
50RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]27310.6590.5000Yes
51HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]27990.6380.5016Yes
52EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]30970.5590.4965No
53PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]31060.5570.4992No
54PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]31690.5410.5004No
55SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]33200.5020.4990No
56GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]33640.4880.5005No
57ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]36230.4350.4958No
58NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]36640.4260.4969No
59PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]37770.4070.4961No
60UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]38250.3960.4969No
61PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]38600.3890.4980No
62PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]38930.3800.4992No
63DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]39450.3700.4998No
64DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]42060.3220.4944No
65TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]42210.3190.4957No
66BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]42830.3050.4957No
67CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]45370.2620.4902No
68USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]45660.2580.4909No
69NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]45900.2540.4916No
70NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]45990.2520.4927No
71BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]49140.2050.4853No
72GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]49500.1990.4854No
73FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]52930.1500.4769No
74DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]53990.1340.4748No
75FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]54950.1210.4728No
76EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]57550.0890.4663No
77GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]58550.0750.4640No
78LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]59290.0640.4624No
79RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]60520.0460.4593No
80RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]61470.0310.4569No
81SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]62030.0230.4556No
82LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]63300.0050.4522No
83ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]66640.0000.4432No
84TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]85840.0000.3912No
85C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]92410.0000.3734No
86ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]97240.0000.3604No
87CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]109330.0000.3276No
88ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]114330.0000.3141No
89IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]117300.0000.3061No
90CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]122200.0000.2929No
91TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]125100.0000.2850No
92GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]127900.0000.2775No
93ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]132360.0000.2654No
94TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]134250.0000.2603No
95SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]136490.0000.2543No
96TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]141840.0000.2398No
97SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]159070.0000.1932No
98FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]169020.0000.1663No
99RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]169040.0000.1662No
100VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]172350.0000.1573No
101PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]175420.0000.1490No
102DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]183610.0000.1268No
103BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]189380.0000.1112No
104RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]201830.0000.0775No
105INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]201960.0000.0772No
106TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]203490.0000.0731No
107SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]206530.0000.0649No
108C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]216830.0000.0370No
109FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]233720.000-0.0087No
110LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]234550.000-0.0109No
111LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]236880.000-0.0172No
112ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]255720.000-0.0682No
113MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]270510.000-0.1082No
114MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]27177-0.011-0.1116No
115PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]27304-0.035-0.1148No
116BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]27336-0.040-0.1154No
117EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]27689-0.080-0.1245No
118SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]27691-0.080-0.1241No
119STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]27785-0.093-0.1262No
120AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]28292-0.156-0.1390No
121FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]28333-0.161-0.1393No
122UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]28541-0.191-0.1439No
123TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]28573-0.196-0.1437No
124NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]28625-0.203-0.1440No
125DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]28652-0.206-0.1436No
126KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]28785-0.225-0.1460No
127DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]28901-0.241-0.1478No
128GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]28903-0.241-0.1466No
129LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]29053-0.261-0.1492No
130B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]29078-0.265-0.1485No
131ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]29179-0.279-0.1497No
132REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]29191-0.281-0.1485No
133CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]29505-0.325-0.1553No
134MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]29756-0.360-0.1601No
135VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]29817-0.370-0.1598No
136MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]30188-0.426-0.1675No
137TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]30695-0.504-0.1786No
138RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]30713-0.508-0.1764No
139QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]30964-0.551-0.1802No
140SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]31063-0.568-0.1798No
141FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]31189-0.587-0.1801No
142EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]31416-0.631-0.1829No
143ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]31451-0.638-0.1804No
144MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]31897-0.736-0.1886No
145DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]32173-0.803-0.1918No
146SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]32221-0.813-0.1887No
147DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]32363-0.849-0.1881No
148ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]32529-0.886-0.1878No
149CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]33082-1.043-0.1973No
150VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]33563-1.191-0.2040No
151PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]33936-1.318-0.2070No
152KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]34131-1.386-0.2050No
153ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]34375-1.491-0.2036No
154DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]34586-1.576-0.2010No
155ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]34776-1.660-0.1973No
156H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]34860-1.697-0.1906No
157NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]35347-1.975-0.1932No
158MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]35364-1.991-0.1831No
159CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]35533-2.104-0.1765No
160CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]35606-2.161-0.1670No
161REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]35736-2.266-0.1585No
162RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]35763-2.289-0.1471No
163ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]35940-2.447-0.1389No
164ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]35967-2.474-0.1265No
165AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]35978-2.480-0.1136No
166HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]36025-2.519-0.1015No
167CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]36242-2.762-0.0927No
168TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36375-2.898-0.0809No
169TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]36449-2.976-0.0671No
170TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36763-3.461-0.0573No
171KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36852-3.640-0.0404No
172RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]37043-4.376-0.0223No
173TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]37053-4.4500.0010No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN