Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetFAN_EMBRYONIC_CTX_MICROGLIA_1
Enrichment Score (ES)-0.8524563
Normalized Enrichment Score (NES)-1.8317119
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: FAN_EMBRYONIC_CTX_MICROGLIA_1   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CDK2AP2cyclin dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:30833]4222.530-0.0042No
2RHEBRas homolog, mTORC1 binding [Source:HGNC Symbol;Acc:HGNC:10011]9941.561-0.0152No
3EVI2Becotropic viral integration site 2B [Source:HGNC Symbol;Acc:HGNC:3500]16451.089-0.0297No
4CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]19020.962-0.0339No
5CKLFchemokine like factor [Source:HGNC Symbol;Acc:HGNC:13253]27380.656-0.0547No
6HERC5HECT and RLD domain containing E3 ubiquitin protein ligase 5 [Source:HGNC Symbol;Acc:HGNC:24368]29850.582-0.0597No
7DDX39ADExD-box helicase 39A [Source:HGNC Symbol;Acc:HGNC:17821]31170.554-0.0617No
8SRSF3serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]36690.426-0.0754No
9H4C3H4 clustered histone 3 [Source:HGNC Symbol;Acc:HGNC:4787]101570.000-0.2510No
10C21orf58chromosome 21 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:1300]107250.000-0.2663No
11AC091057.1OTU deubiquitinase 7A pseudogene [Source:NCBI gene (formerly Entrezgene);Acc:100288637]127830.000-0.3220No
12H1-3H1.3 linker histone, cluster member [Source:HGNC Symbol;Acc:HGNC:4717]225280.000-0.5858No
13ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]258040.000-0.6745No
14GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]27557-0.067-0.7217No
15SRSF10serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]27708-0.083-0.7256No
16RPS27Lribosomal protein S27 like [Source:HGNC Symbol;Acc:HGNC:18476]27980-0.121-0.7326No
17HJURPHolliday junction recognition protein [Source:HGNC Symbol;Acc:HGNC:25444]29215-0.283-0.7652No
18ANAPC11anaphase promoting complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:14452]29624-0.343-0.7752No
19CDC27cell division cycle 27 [Source:HGNC Symbol;Acc:HGNC:1728]29692-0.353-0.7760No
20ANP32Eacidic nuclear phosphoprotein 32 family member E [Source:HGNC Symbol;Acc:HGNC:16673]31243-0.597-0.8163No
21PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]31394-0.626-0.8186No
22PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]31585-0.666-0.8218No
23BUB3BUB3 mitotic checkpoint protein [Source:HGNC Symbol;Acc:HGNC:1151]31692-0.689-0.8228No
24CENPMcentromere protein M [Source:HGNC Symbol;Acc:HGNC:18352]31808-0.715-0.8238No
25NUCKS1nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:HGNC Symbol;Acc:HGNC:29923]31850-0.727-0.8229No
26RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]32718-0.936-0.8437No
27CENPCcentromere protein C [Source:HGNC Symbol;Acc:HGNC:1854]32733-0.943-0.8414No
28CEP152centrosomal protein 152 [Source:HGNC Symbol;Acc:HGNC:29298]32977-1.008-0.8451No
29ITGB3BPintegrin subunit beta 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6157]33026-1.024-0.8435No
30PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]33245-1.087-0.8463No
31TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]33447-1.152-0.8484No
32H2AC17H2A clustered histone 17 [Source:HGNC Symbol;Acc:HGNC:4735]33596-1.200-0.8490Yes
33CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]33621-1.208-0.8463Yes
34HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]33793-1.266-0.8473Yes
35FAM111Afamily with sequence similarity 111 member A [Source:HGNC Symbol;Acc:HGNC:24725]33810-1.273-0.8441Yes
36BARD1BRCA1 associated RING domain 1 [Source:HGNC Symbol;Acc:HGNC:952]33862-1.289-0.8418Yes
37ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]33885-1.299-0.8387Yes
38CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33887-1.300-0.8350Yes
39DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]34101-1.375-0.8369Yes
40SIVA1SIVA1 apoptosis inducing factor [Source:HGNC Symbol;Acc:HGNC:17712]34301-1.457-0.8381Yes
41TROAPtrophinin associated protein [Source:HGNC Symbol;Acc:HGNC:12327]34306-1.460-0.8341Yes
42CNTRLcentriolin [Source:HGNC Symbol;Acc:HGNC:1858]34484-1.533-0.8345Yes
43PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]34588-1.576-0.8328Yes
44MND1meiotic nuclear divisions 1 [Source:HGNC Symbol;Acc:HGNC:24839]34625-1.594-0.8293Yes
45SMC1Astructural maintenance of chromosomes 1A [Source:HGNC Symbol;Acc:HGNC:11111]34656-1.608-0.8255Yes
46DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]34685-1.623-0.8216Yes
47H2AZ1H2A.Z variant histone 1 [Source:HGNC Symbol;Acc:HGNC:4741]34823-1.682-0.8206Yes
48HP1BP3heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]34897-1.715-0.8177Yes
49POLQDNA polymerase theta [Source:HGNC Symbol;Acc:HGNC:9186]34936-1.737-0.8137Yes
50PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34938-1.741-0.8088Yes
51MRPL18mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:14477]34949-1.747-0.8041Yes
52CDC25Ccell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]34956-1.749-0.7993Yes
53CKAP5cytoskeleton associated protein 5 [Source:HGNC Symbol;Acc:HGNC:28959]35058-1.801-0.7969Yes
54KPNA2karyopherin subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:6395]35063-1.804-0.7919Yes
55CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]35148-1.850-0.7889Yes
56GLAgalactosidase alpha [Source:HGNC Symbol;Acc:HGNC:4296]35157-1.854-0.7838Yes
57CENPNcentromere protein N [Source:HGNC Symbol;Acc:HGNC:30873]35206-1.891-0.7798Yes
58ARHGAP11ARho GTPase activating protein 11A [Source:HGNC Symbol;Acc:HGNC:15783]35215-1.897-0.7746Yes
59BRCA2BRCA2 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1101]35262-1.927-0.7703Yes
60TMEM106Ctransmembrane protein 106C [Source:HGNC Symbol;Acc:HGNC:28775]35313-1.955-0.7661Yes
61KIF20Bkinesin family member 20B [Source:HGNC Symbol;Acc:HGNC:7212]35320-1.960-0.7607Yes
62ATAD5ATPase family AAA domain containing 5 [Source:HGNC Symbol;Acc:HGNC:25752]35349-1.978-0.7559Yes
63DEPDC1DEP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:22949]35388-2.006-0.7512Yes
64TACC3transforming acidic coiled-coil containing protein 3 [Source:HGNC Symbol;Acc:HGNC:11524]35484-2.073-0.7479Yes
65DEKDEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:2768]35554-2.116-0.7437Yes
66BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]35573-2.135-0.7381Yes
67FANCD2FA complementation group D2 [Source:HGNC Symbol;Acc:HGNC:3585]35587-2.146-0.7324Yes
68RAD21RAD21 cohesin complex component [Source:HGNC Symbol;Acc:HGNC:9811]35640-2.191-0.7275Yes
69MZT1mitotic spindle organizing protein 1 [Source:HGNC Symbol;Acc:HGNC:33830]35653-2.203-0.7216Yes
70MXD3MAX dimerization protein 3 [Source:HGNC Symbol;Acc:HGNC:14008]35695-2.228-0.7164Yes
71CENPEcentromere protein E [Source:HGNC Symbol;Acc:HGNC:1856]35717-2.250-0.7105Yes
72CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]35735-2.266-0.7045Yes
73TUBA1Ctubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:20768]35782-2.303-0.6992Yes
74AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35816-2.333-0.6935Yes
75KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]35820-2.334-0.6869Yes
76TPX2TPX2 microtubule nucleation factor [Source:HGNC Symbol;Acc:HGNC:1249]35837-2.347-0.6807Yes
77CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]35859-2.368-0.6745Yes
78SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]35874-2.384-0.6681Yes
79SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]35901-2.411-0.6620Yes
80MAD2L1mitotic arrest deficient 2 like 1 [Source:HGNC Symbol;Acc:HGNC:6763]35937-2.441-0.6560Yes
81SGO1shugoshin 1 [Source:HGNC Symbol;Acc:HGNC:25088]36030-2.528-0.6513Yes
82PHF19PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]36051-2.548-0.6446Yes
83PIMREGPICALM interacting mitotic regulator [Source:HGNC Symbol;Acc:HGNC:25483]36059-2.552-0.6375Yes
84EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36079-2.583-0.6306Yes
85GTSE1G2 and S-phase expressed 1 [Source:HGNC Symbol;Acc:HGNC:13698]36081-2.586-0.6233Yes
86CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]36108-2.616-0.6166Yes
87SPAG5sperm associated antigen 5 [Source:HGNC Symbol;Acc:HGNC:13452]36141-2.658-0.6099Yes
88NCAPG2non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]36148-2.663-0.6025Yes
89DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]36174-2.692-0.5955Yes
90UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]36187-2.707-0.5881Yes
91H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36206-2.726-0.5808Yes
92KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]36227-2.746-0.5736Yes
93CITcitron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]36259-2.775-0.5665Yes
94UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36279-2.795-0.5591Yes
95IQGAP3IQ motif containing GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:20669]36300-2.818-0.5516Yes
96BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36304-2.820-0.5437Yes
97TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36339-2.870-0.5364Yes
98ESPL1extra spindle pole bodies like 1, separase [Source:HGNC Symbol;Acc:HGNC:16856]36344-2.872-0.5284Yes
99NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36371-2.891-0.5208Yes
100NCAPD2non-SMC condensin I complex subunit D2 [Source:HGNC Symbol;Acc:HGNC:24305]36376-2.899-0.5127Yes
101HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36383-2.908-0.5046Yes
102CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]36388-2.914-0.4964Yes
103ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]36417-2.950-0.4888Yes
104NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36418-2.951-0.4804Yes
105SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36430-2.964-0.4722Yes
106TTF2transcription termination factor 2 [Source:HGNC Symbol;Acc:HGNC:12398]36432-2.964-0.4638Yes
107CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36469-2.992-0.4563Yes
108SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]36478-3.003-0.4480Yes
109PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]36483-3.006-0.4395Yes
110KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]36494-3.018-0.4312Yes
111CLSPNclaspin [Source:HGNC Symbol;Acc:HGNC:19715]36509-3.035-0.4229Yes
112NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]36516-3.057-0.4144Yes
113CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]36535-3.075-0.4062Yes
114PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36576-3.129-0.3983Yes
115MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]36586-3.138-0.3896Yes
116ASF1Banti-silencing function 1B histone chaperone [Source:HGNC Symbol;Acc:HGNC:20996]36591-3.140-0.3808Yes
117MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]36592-3.140-0.3719Yes
118TCF19transcription factor 19 [Source:HGNC Symbol;Acc:HGNC:11629]36597-3.152-0.3630Yes
119TMPOthymopoietin [Source:HGNC Symbol;Acc:HGNC:11875]36607-3.171-0.3543Yes
120FAM83Dfamily with sequence similarity 83 member D [Source:HGNC Symbol;Acc:HGNC:16122]36609-3.173-0.3453Yes
121KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36611-3.176-0.3362Yes
122FBXO5F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]36613-3.178-0.3272Yes
123PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]36622-3.191-0.3184Yes
124CCDC18coiled-coil domain containing 18 [Source:HGNC Symbol;Acc:HGNC:30370]36623-3.192-0.3093Yes
125CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36630-3.207-0.3003Yes
126KIF4Akinesin family member 4A [Source:HGNC Symbol;Acc:HGNC:13339]36650-3.229-0.2917Yes
127KIF23kinesin family member 23 [Source:HGNC Symbol;Acc:HGNC:6392]36654-3.232-0.2825Yes
128KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]36663-3.250-0.2735Yes
129SPC25SPC25 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:24031]36665-3.258-0.2643Yes
130CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]36673-3.282-0.2551Yes
131CKAP2Lcytoskeleton associated protein 2 like [Source:HGNC Symbol;Acc:HGNC:26877]36687-3.310-0.2461Yes
132KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36692-3.321-0.2367Yes
133CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]36709-3.356-0.2276Yes
134BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36724-3.390-0.2183Yes
135KNSTRNkinetochore localized astrin (SPAG5) binding protein [Source:HGNC Symbol;Acc:HGNC:30767]36731-3.399-0.2088Yes
136ANLNanillin actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]36818-3.574-0.2010Yes
137AURKBaurora kinase B [Source:HGNC Symbol;Acc:HGNC:11390]36833-3.603-0.1911Yes
138KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]36837-3.615-0.1809Yes
139DEPDC1BDEP domain containing 1B [Source:HGNC Symbol;Acc:HGNC:24902]36851-3.637-0.1709Yes
140CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]36855-3.645-0.1606Yes
141ESCO2establishment of sister chromatid cohesion N-acetyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:27230]36859-3.652-0.1503Yes
142CCNFcyclin F [Source:HGNC Symbol;Acc:HGNC:1591]36862-3.659-0.1400Yes
143KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36868-3.675-0.1296Yes
144NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36870-3.679-0.1192Yes
145FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36876-3.698-0.1088Yes
146CENPFcentromere protein F [Source:HGNC Symbol;Acc:HGNC:1857]36882-3.715-0.0984Yes
147RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36891-3.747-0.0879Yes
148TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]36894-3.758-0.0773Yes
149NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36922-3.842-0.0671Yes
150CDKN2Ccyclin dependent kinase inhibitor 2C [Source:HGNC Symbol;Acc:HGNC:1789]36935-3.893-0.0563Yes
151H2AZ2H2A.Z variant histone 2 [Source:HGNC Symbol;Acc:HGNC:20664]36949-3.950-0.0455Yes
152CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]36955-3.967-0.0343Yes
153NRMnurim [Source:HGNC Symbol;Acc:HGNC:8003]37033-4.339-0.0240Yes
154ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]37059-4.485-0.0120Yes
155TK1thymidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:11830]37060-4.4900.0008Yes
Table: GSEA details [plain text format]



Fig 2: FAN_EMBRYONIC_CTX_MICROGLIA_1   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: FAN_EMBRYONIC_CTX_MICROGLIA_1: Random ES distribution   
Gene set null distribution of ES for FAN_EMBRYONIC_CTX_MICROGLIA_1