Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.47562176
Normalized Enrichment Score (NES)1.3189873
Nominal p-value0.0
FDR q-value0.0571944
FWER p-Value0.131
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]24.9720.0222Yes
2IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]44.9620.0445Yes
3GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]434.6350.0642Yes
4TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]514.5480.0844Yes
5ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]654.4130.1039Yes
6BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]964.1270.1216Yes
7IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]1064.0640.1396Yes
8GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1283.9190.1566Yes
9CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]1683.6560.1719Yes
10CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]1873.5430.1873Yes
11GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]1993.4930.2027Yes
12TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2013.4730.2182Yes
13SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2213.3630.2328Yes
14CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2303.3110.2474Yes
15CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]2323.3040.2622Yes
16SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]2393.2740.2767Yes
17SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]3462.7960.2864Yes
18ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4092.5830.2963Yes
19MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]4262.5280.3072Yes
20IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]4572.4560.3174Yes
21PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]4912.3780.3272Yes
22BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]5632.2190.3352Yes
23BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]5782.1760.3446Yes
24TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]5862.1610.3541Yes
25DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]6172.1160.3628Yes
26TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]6372.0960.3717Yes
27CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]6462.0720.3807Yes
28FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]6472.0720.3900Yes
29IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]7041.9690.3974Yes
30TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]7221.9440.4056Yes
31ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]7291.9370.4141Yes
32IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]7321.9300.4227Yes
33CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]7591.8840.4305Yes
34CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]7731.8580.4385Yes
35SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]8331.7480.4447Yes
36SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]9491.6120.4488Yes
37ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]10191.5340.4538Yes
38CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]11561.4330.4566Yes
39HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]12101.3800.4613Yes
40PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]14071.2410.4616Yes
41NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]14281.2230.4665Yes
42BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]14761.1880.4706Yes
43DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]14871.1820.4756Yes
44BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]16741.0680.4754No
45ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]19410.9390.4724No
46PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]22850.8060.4667No
47CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]25110.7310.4639No
48XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]25550.7130.4659No
49CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]26870.6720.4654No
50RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]32080.5290.4537No
51CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]33860.4850.4511No
52BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]38790.3840.4395No
53MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]38950.3800.4408No
54PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]39460.3700.4411No
55APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]44700.2750.4281No
56DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]46340.2470.4248No
57PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]49890.1920.4161No
58EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]53620.1390.4067No
59TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]54980.1210.4035No
60DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]56510.1040.3999No
61ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]59560.0600.3919No
62BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]73650.0000.3538No
63CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]75620.0000.3485No
64PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]76480.0000.3462No
65GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]83700.0000.3267No
66FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]91180.0000.3064No
67GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]94970.0000.2962No
68PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]99160.0000.2849No
69HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]107890.0000.2613No
70LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]112720.0000.2482No
71PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]114540.0000.2433No
72IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]117420.0000.2356No
73ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]119560.0000.2298No
74TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]124300.0000.2170No
75IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]137340.0000.1817No
76BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]155380.0000.1329No
77BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]155470.0000.1327No
78CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]157290.0000.1278No
79DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]159900.0000.1207No
80F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]161130.0000.1174No
81F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]164370.0000.1087No
82AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]165750.0000.1050No
83TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170590.0000.0919No
84HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]172670.0000.0863No
85LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]186380.0000.0492No
86AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]197840.0000.0182No
87FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]201100.0000.0094No
88SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]213220.000-0.0234No
89KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]217570.000-0.0352No
90CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]227710.000-0.0626No
91CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]228500.000-0.0647No
92IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]244300.000-0.1075No
93PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]253060.000-0.1312No
94CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]264260.000-0.1615No
95TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]270990.000-0.1797No
96NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27423-0.051-0.1882No
97IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]27462-0.057-0.1890No
98BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]27909-0.111-0.2005No
99CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]28046-0.127-0.2036No
100ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]28147-0.139-0.2057No
101BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]28611-0.201-0.2174No
102IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]28798-0.226-0.2214No
103DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]29166-0.277-0.2301No
104GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]29195-0.281-0.2296No
105GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29407-0.314-0.2339No
106MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]29578-0.335-0.2370No
107SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29601-0.340-0.2361No
108BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29969-0.392-0.2442No
109VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]30002-0.397-0.2433No
110DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]30347-0.448-0.2506No
111PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]30527-0.477-0.2533No
112RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]30713-0.508-0.2561No
113RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]31549-0.657-0.2757No
114SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]31613-0.673-0.2744No
115CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]31616-0.673-0.2715No
116BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]31656-0.681-0.2695No
117PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]31746-0.697-0.2687No
118EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]31757-0.699-0.2659No
119JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]31973-0.756-0.2683No
120DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]32282-0.827-0.2729No
121MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]32863-0.978-0.2843No
122RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]32931-0.997-0.2816No
123GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]33229-1.082-0.2848No
124CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]33489-1.166-0.2866No
125ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]33617-1.207-0.2846No
126SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]33683-1.230-0.2808No
127HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]33793-1.266-0.2781No
128TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]33903-1.306-0.2752No
129PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]33978-1.333-0.2712No
130LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]34096-1.372-0.2682No
131CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34194-1.408-0.2646No
132CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]34218-1.417-0.2588No
133CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]34240-1.428-0.2530No
134CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34360-1.482-0.2496No
135PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]34635-1.598-0.2498No
136RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]34715-1.633-0.2446No
137EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]35019-1.777-0.2449No
138DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]35057-1.801-0.2378No
139BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]35197-1.888-0.2331No
140EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35249-1.918-0.2259No
141DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]35268-1.930-0.2177No
142LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]35429-2.034-0.2129No
143BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]35535-2.106-0.2063No
144CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35569-2.133-0.1976No
145PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35577-2.137-0.1882No
146RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35792-2.309-0.1837No
147FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]35798-2.313-0.1734No
148CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35868-2.378-0.1646No
149ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36077-2.583-0.1587No
150TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36339-2.870-0.1529No
151GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]36360-2.886-0.1405No
152TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36400-2.929-0.1284No
153CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]36464-2.987-0.1167No
154GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36555-3.099-0.1052No
155GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36652-3.230-0.0934No
156BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36854-3.645-0.0825No
157BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36897-3.766-0.0667No
158H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36940-3.913-0.0503No
159CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36964-3.986-0.0330No
160PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]36976-4.026-0.0153No
161WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36989-4.0890.0027No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS