Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_COAGULATION
Enrichment Score (ES)0.4163294
Normalized Enrichment Score (NES)1.0935858
Nominal p-value0.2159091
FDR q-value0.24108756
FWER p-Value0.576
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_COAGULATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SERPINB2serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584]104.9440.0476Yes
2PDGFBplatelet derived growth factor subunit B [Source:HGNC Symbol;Acc:HGNC:8800]544.5180.0901Yes
3SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1773.6050.1217Yes
4CFBcomplement factor B [Source:HGNC Symbol;Acc:HGNC:1037]1823.5900.1563Yes
5FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1903.5330.1903Yes
6PLEKpleckstrin [Source:HGNC Symbol;Acc:HGNC:9070]3692.7000.2116Yes
7MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]4262.5280.2346Yes
8MAFFMAF bZIP transcription factor F [Source:HGNC Symbol;Acc:HGNC:6780]4592.4510.2574Yes
9MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]4742.4070.2803Yes
10F9coagulation factor IX [Source:HGNC Symbol;Acc:HGNC:3551]5522.2350.2999Yes
11SERPINC1serpin family C member 1 [Source:HGNC Symbol;Acc:HGNC:775]6682.0360.3165Yes
12TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]7221.9440.3338Yes
13WDR1WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]7391.9200.3520Yes
14ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]10191.5340.3593Yes
15CD9CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]10601.5000.3727Yes
16CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]11561.4330.3840Yes
17MMP14matrix metallopeptidase 14 [Source:HGNC Symbol;Acc:HGNC:7160]15121.1690.3857Yes
18FBN1fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]15611.1420.3955Yes
19THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]16471.0870.4037Yes
20FYNFYN proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4037]17701.0220.4103Yes
21C3complement C3 [Source:HGNC Symbol;Acc:HGNC:1318]20580.8920.4111Yes
22VWFvon Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]23970.7660.4094Yes
23CTSVcathepsin V [Source:HGNC Symbol;Acc:HGNC:2538]25480.7160.4123Yes
24ARF4ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]26440.6850.4163Yes
25GNG12G protein subunit gamma 12 [Source:HGNC Symbol;Acc:HGNC:19663]34110.4800.4002No
26CTSOcathepsin O [Source:HGNC Symbol;Acc:HGNC:2542]34460.4710.4039No
27KLF7Kruppel like factor 7 [Source:HGNC Symbol;Acc:HGNC:6350]37240.4150.4004No
28ITIH1inter-alpha-trypsin inhibitor heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:6166]37920.4030.4025No
29PREPprolyl endopeptidase [Source:HGNC Symbol;Acc:HGNC:9358]42600.3100.3928No
30F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]44310.2820.3910No
31RABIFRAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]44990.2680.3918No
32GNB2G protein subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:4398]47010.2360.3886No
33MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]48470.2140.3868No
34BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]49140.2050.3870No
35C2complement C2 [Source:HGNC Symbol;Acc:HGNC:1248]49830.1930.3870No
36DUSP14dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]49870.1920.3888No
37LAMP2lysosomal associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:6501]50100.1900.3900No
38ADAM9ADAM metallopeptidase domain 9 [Source:HGNC Symbol;Acc:HGNC:216]51320.1720.3884No
39HTRA1HtrA serine peptidase 1 [Source:HGNC Symbol;Acc:HGNC:9476]53050.1470.3852No
40F10coagulation factor X [Source:HGNC Symbol;Acc:HGNC:3528]54220.1300.3833No
41SPARCsecreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]55580.1140.3807No
42MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]57310.0920.3770No
43FN1fibronectin 1 [Source:HGNC Symbol;Acc:HGNC:3778]58020.0820.3759No
44ITGB3integrin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6156]63640.0000.3607No
45RAPGEF3Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]66910.0000.3519No
46PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]99160.0000.2646No
47APOA1apolipoprotein A1 [Source:HGNC Symbol;Acc:HGNC:600]101240.0000.2590No
48APOC3apolipoprotein C3 [Source:HGNC Symbol;Acc:HGNC:610]101380.0000.2587No
49APOC2apolipoprotein C2 [Source:HGNC Symbol;Acc:HGNC:609]101400.0000.2586No
50APOC1apolipoprotein C1 [Source:HGNC Symbol;Acc:HGNC:607]101410.0000.2586No
51F13Bcoagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]108490.0000.2395No
52KLKB1kallikrein B1 [Source:HGNC Symbol;Acc:HGNC:6371]111100.0000.2325No
53TMPRSS6transmembrane serine protease 6 [Source:HGNC Symbol;Acc:HGNC:16517]115000.0000.2220No
54PROZprotein Z, vitamin K dependent plasma glycoprotein [Source:HGNC Symbol;Acc:HGNC:9460]115470.0000.2207No
55PROCprotein C, inactivator of coagulation factors Va and VIIIa [Source:HGNC Symbol;Acc:HGNC:9451]115640.0000.2203No
56ACOX2acyl-CoA oxidase 2 [Source:HGNC Symbol;Acc:HGNC:120]122550.0000.2016No
57P2RY1purinergic receptor P2Y1 [Source:HGNC Symbol;Acc:HGNC:8539]140560.0000.1529No
58MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155870.0000.1115No
59C8Bcomplement C8 beta chain [Source:HGNC Symbol;Acc:HGNC:1353]156530.0000.1097No
60C8Acomplement C8 alpha chain [Source:HGNC Symbol;Acc:HGNC:1352]156540.0000.1097No
61C8Gcomplement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]156560.0000.1097No
62CFDcomplement factor D [Source:HGNC Symbol;Acc:HGNC:2771]157530.0000.1071No
63CFIcomplement factor I [Source:HGNC Symbol;Acc:HGNC:5394]157540.0000.1071No
64DCTdopachrome tautomerase [Source:HGNC Symbol;Acc:HGNC:2709]159940.0000.1006No
65C9complement C9 [Source:HGNC Symbol;Acc:HGNC:1358]160690.0000.0986No
66F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]161130.0000.0975No
67F12coagulation factor XII [Source:HGNC Symbol;Acc:HGNC:3530]164030.0000.0897No
68F11coagulation factor XI [Source:HGNC Symbol;Acc:HGNC:3529]164040.0000.0897No
69FGAfibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]166290.0000.0836No
70FGGfibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]166300.0000.0836No
71OLR1oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]166760.0000.0824No
72GP9glycoprotein IX platelet [Source:HGNC Symbol;Acc:HGNC:4444]170520.0000.0722No
73TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170590.0000.0721No
74HRGhistidine rich glycoprotein [Source:HGNC Symbol;Acc:HGNC:5181]173890.0000.0632No
75HNF4Ahepatocyte nuclear factor 4 alpha [Source:HGNC Symbol;Acc:HGNC:5024]175620.0000.0585No
76SERPING1serpin family G member 1 [Source:HGNC Symbol;Acc:HGNC:1228]176760.0000.0554No
77SERPINA1serpin family A member 1 [Source:HGNC Symbol;Acc:HGNC:8941]176870.0000.0552No
78DPP4dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]178290.0000.0514No
79MMP7matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174]189610.0000.0208No
80MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]189640.0000.0207No
81MMP8matrix metallopeptidase 8 [Source:HGNC Symbol;Acc:HGNC:7175]189730.0000.0205No
82PF4platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861]198390.000-0.0029No
83HMGCS23-hydroxy-3-methylglutaryl-CoA synthase 2 [Source:HGNC Symbol;Acc:HGNC:5008]198800.000-0.0040No
84PLGplasminogen [Source:HGNC Symbol;Acc:HGNC:9071]199130.000-0.0049No
85C1QAcomplement C1q A chain [Source:HGNC Symbol;Acc:HGNC:1241]199690.000-0.0064No
86LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]200780.000-0.0093No
87KLK8kallikrein related peptidase 8 [Source:HGNC Symbol;Acc:HGNC:6369]205110.000-0.0210No
88MMP11matrix metallopeptidase 11 [Source:HGNC Symbol;Acc:HGNC:7157]207350.000-0.0270No
89MMP15matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]207400.000-0.0271No
90F2RL2coagulation factor II thrombin receptor like 2 [Source:HGNC Symbol;Acc:HGNC:3539]209520.000-0.0328No
91MEP1Ameprin A subunit alpha [Source:HGNC Symbol;Acc:HGNC:7015]229760.000-0.0876No
92GP1BAglycoprotein Ib platelet subunit alpha [Source:HGNC Symbol;Acc:HGNC:4439]230340.000-0.0891No
93CPB2carboxypeptidase B2 [Source:HGNC Symbol;Acc:HGNC:2300]232100.000-0.0938No
94TFPI2tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761]246720.000-0.1334No
95PRSS23serine protease 23 [Source:HGNC Symbol;Acc:HGNC:14370]249370.000-0.1405No
96ITGA2integrin subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:6137]260750.000-0.1713No
97A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]266180.000-0.1860No
98RAC1Rac family small GTPase 1 [Source:HGNC Symbol;Acc:HGNC:9801]27366-0.044-0.2058No
99THBDthrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784]27398-0.047-0.2061No
100RGNregucalcin [Source:HGNC Symbol;Acc:HGNC:9989]28106-0.134-0.2240No
101CPN1carboxypeptidase N subunit 1 [Source:HGNC Symbol;Acc:HGNC:2312]28262-0.153-0.2267No
102DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]28901-0.241-0.2416No
103C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]29570-0.335-0.2564No
104HPNhepsin [Source:HGNC Symbol;Acc:HGNC:5155]29933-0.388-0.2625No
105MASP2mannan binding lectin serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:6902]30119-0.415-0.2635No
106PEF1penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30009]30128-0.417-0.2597No
107C1Rcomplement C1r [Source:HGNC Symbol;Acc:HGNC:1246]30614-0.493-0.2680No
108S100A13S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]31162-0.583-0.2772No
109CTSKcathepsin K [Source:HGNC Symbol;Acc:HGNC:2536]31355-0.616-0.2764No
110MSRB2methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:HGNC:17061]31497-0.646-0.2740No
111MST1macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]31511-0.648-0.2681No
112SIRT2sirtuin 2 [Source:HGNC Symbol;Acc:HGNC:10886]31626-0.676-0.2646No
113GDAguanine deaminase [Source:HGNC Symbol;Acc:HGNC:4212]31648-0.680-0.2586No
114F8coagulation factor VIII [Source:HGNC Symbol;Acc:HGNC:3546]31667-0.683-0.2525No
115CTSBcathepsin B [Source:HGNC Symbol;Acc:HGNC:2527]31922-0.743-0.2521No
116CTSEcathepsin E [Source:HGNC Symbol;Acc:HGNC:2530]31972-0.756-0.2462No
117CTSHcathepsin H [Source:HGNC Symbol;Acc:HGNC:2535]32196-0.808-0.2444No
118CRIP2cysteine rich protein 2 [Source:HGNC Symbol;Acc:HGNC:2361]33008-1.019-0.2565No
119ISCUiron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]33356-1.125-0.2550No
120CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]33489-1.166-0.2473No
121CPQcarboxypeptidase Q [Source:HGNC Symbol;Acc:HGNC:16910]33579-1.195-0.2381No
122SH2B2SH2B adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:17381]33705-1.237-0.2295No
123PROS1protein S [Source:HGNC Symbol;Acc:HGNC:9456]33784-1.263-0.2194No
124CAPN2calpain 2 [Source:HGNC Symbol;Acc:HGNC:1479]34158-1.395-0.2160No
125S100A1S100 calcium binding protein A1 [Source:HGNC Symbol;Acc:HGNC:10486]34199-1.409-0.2034No
126USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]34280-1.445-0.1916No
127TFtransferrin [Source:HGNC Symbol;Acc:HGNC:11740]34452-1.522-0.1815No
128CSRP1cysteine and glycine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:2469]34570-1.571-0.1695No
129COMPcartilage oligomeric matrix protein [Source:HGNC Symbol;Acc:HGNC:2227]35032-1.785-0.1647No
130LTA4Hleukotriene A4 hydrolase [Source:HGNC Symbol;Acc:HGNC:6710]35232-1.905-0.1517No
131CAPN5calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]35331-1.966-0.1353No
132LRP1LDL receptor related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]35812-2.327-0.1258No
133PLAUplasminogen activator, urokinase [Source:HGNC Symbol;Acc:HGNC:9052]36385-2.909-0.1131No
134GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36652-3.230-0.0890No
135LGMNlegumain [Source:HGNC Symbol;Acc:HGNC:9472]36694-3.323-0.0580No
136ANGangiogenin [Source:HGNC Symbol;Acc:HGNC:483]36713-3.369-0.0259No
137CFHcomplement factor H [Source:HGNC Symbol;Acc:HGNC:4883]36888-3.7260.0055No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_COAGULATION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_COAGULATION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_COAGULATION