Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.48544115
Normalized Enrichment Score (NES)-1.0308249
Nominal p-value0.42145178
FDR q-value0.71529937
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]244.8130.0280No
2PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]1173.9770.0493No
3PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]1183.9750.0730No
4ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]2033.4700.0914No
5NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]2463.2550.1096No
6HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]4042.5930.1209No
7POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]4462.4870.1346No
8COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]6802.0200.1403No
9NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]7681.8640.1491No
10APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]9231.6380.1547No
11ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]11811.4060.1561No
12ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]12941.3150.1609No
13GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]14221.2280.1648No
14GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]14451.2110.1714No
15DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]16421.0900.1726No
16GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]17031.0540.1773No
17POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]17191.0450.1831No
18POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]17381.0380.1888No
19GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]17951.0120.1933No
20SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]19380.9400.1951No
21VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]19670.9290.1998No
22SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]22590.8150.1968No
23SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]23060.7970.2003No
24POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]24610.7460.2006No
25GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]26880.6720.1985No
26ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]27660.6460.2003No
27POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]27950.6380.2033No
28RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]29050.6070.2040No
29ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]29250.5980.2070No
30SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]31410.5500.2045No
31ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]31870.5370.2065No
32STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]32510.5180.2079No
33CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]33370.4960.2085No
34TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]34510.4710.2083No
35SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]35220.4560.2091No
36ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]38890.3820.2015No
37CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]39280.3730.2026No
38GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]40860.3450.2005No
39POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]48330.2150.1815No
40NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]49380.2020.1799No
41RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]49800.1930.1800No
42EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]50350.1880.1796No
43ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]51310.1730.1781No
44CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]54520.1260.1702No
45RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]55590.1140.1680No
46RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]59810.0560.1569No
47POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]60600.0440.1551No
48TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]61580.0300.1526No
49BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]157470.000-0.1069No
50BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]177720.000-0.1617No
51NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]234180.000-0.3145No
52ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]258040.000-0.3791No
53POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]27341-0.041-0.4204No
54TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]27377-0.045-0.4211No
55TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]27499-0.059-0.4240No
56TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]27705-0.083-0.4290No
57GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]27849-0.103-0.4323No
58POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]27951-0.116-0.4344No
59MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]28021-0.125-0.4355No
60TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]28582-0.197-0.4495No
61NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]28588-0.198-0.4484No
62DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]29515-0.327-0.4715No
63NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]29566-0.334-0.4709No
64BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29969-0.392-0.4794No
65TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]30013-0.398-0.4782No
66DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]30086-0.410-0.4777No
67CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]30139-0.419-0.4766No
68POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]30450-0.461-0.4823Yes
69VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]30472-0.466-0.4801Yes
70BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]30570-0.481-0.4798Yes
71POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]30734-0.512-0.4812Yes
72SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]30741-0.513-0.4783Yes
73MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]30756-0.516-0.4756Yes
74TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]31121-0.576-0.4820Yes
75CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]31147-0.581-0.4792Yes
76GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]31167-0.584-0.4763Yes
77ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]31178-0.585-0.4730Yes
78RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]31208-0.591-0.4703Yes
79SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]31286-0.605-0.4688Yes
80CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]31287-0.605-0.4652Yes
81POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]31333-0.613-0.4627Yes
82PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]31422-0.632-0.4613Yes
83ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]31454-0.638-0.4584Yes
84TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]31535-0.654-0.4567Yes
85MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]31538-0.654-0.4528Yes
86SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]31540-0.655-0.4489Yes
87SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]31643-0.679-0.4476Yes
88POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]31733-0.694-0.4459Yes
89SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]32217-0.812-0.4541Yes
90NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]32231-0.815-0.4496Yes
91EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]32267-0.823-0.4457Yes
92NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]32436-0.865-0.4451Yes
93AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]32453-0.868-0.4403Yes
94POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]32482-0.875-0.4359Yes
95NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]32643-0.915-0.4347Yes
96RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]32673-0.922-0.4300Yes
97TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]32809-0.965-0.4279Yes
98ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]32844-0.973-0.4230Yes
99TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32856-0.976-0.4175Yes
100UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]32924-0.996-0.4134Yes
101POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]32981-1.009-0.4089Yes
102VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]33083-1.043-0.4054Yes
103RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]33196-1.074-0.4020Yes
104PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]33245-1.087-0.3969Yes
105RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33258-1.093-0.3907Yes
106ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]33271-1.099-0.3844Yes
107NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]33293-1.106-0.3784Yes
108UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]33301-1.110-0.3720Yes
109REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]33397-1.138-0.3678Yes
110ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]33410-1.141-0.3613Yes
111DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]33418-1.144-0.3547Yes
112IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]33506-1.172-0.3500Yes
113HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]33515-1.176-0.3432Yes
114POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]33760-1.256-0.3424Yes
115POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]33803-1.270-0.3359Yes
116ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]33885-1.299-0.3304Yes
117POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]33921-1.313-0.3235Yes
118GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]33927-1.315-0.3158Yes
119FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]34079-1.367-0.3117Yes
120TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]34157-1.395-0.3055Yes
121POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34278-1.445-0.3001Yes
122USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]34280-1.445-0.2915Yes
123SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]34326-1.469-0.2840Yes
124AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]34395-1.498-0.2769Yes
125NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]34412-1.505-0.2684Yes
126ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]34642-1.602-0.2650Yes
127XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]34852-1.694-0.2606Yes
128RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]34857-1.696-0.2506Yes
129NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]34922-1.731-0.2420Yes
130RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]34954-1.749-0.2324Yes
131RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]34963-1.752-0.2222Yes
132GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]34969-1.755-0.2118Yes
133POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]35097-1.824-0.2044Yes
134DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]35117-1.833-0.1940Yes
135SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]35431-2.036-0.1903Yes
136POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]35571-2.133-0.1814Yes
137POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]35834-2.346-0.1745Yes
138AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]35838-2.349-0.1605Yes
139RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35861-2.370-0.1470Yes
140AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]35888-2.402-0.1334Yes
141NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36042-2.544-0.1224Yes
142POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36139-2.657-0.1091Yes
143PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]36266-2.780-0.0960Yes
144POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]36465-2.988-0.0835Yes
145GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36555-3.099-0.0674Yes
146RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36566-3.117-0.0491Yes
147LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36680-3.288-0.0326Yes
148DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]36770-3.470-0.0143Yes
149DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36924-3.8470.0045Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR