Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.62731594
Normalized Enrichment Score (NES)1.5003567
Nominal p-value0.012578616
FDR q-value0.017597763
FWER p-Value0.031
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]404.6710.0666Yes
2ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]734.2880.1278Yes
3ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]784.2340.1890Yes
4JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1463.8150.2424Yes
5SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1773.6050.2938Yes
6FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1903.5330.3447Yes
7SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]2433.2610.3905Yes
8SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]3462.7960.4282Yes
9TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]3862.6510.4656Yes
10ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]4872.3860.4974Yes
11TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]5062.3240.5306Yes
12PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]6951.9930.5544Yes
13SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]8331.7480.5760Yes
14UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]10341.5180.5926Yes
15BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]10361.5150.6145Yes
16THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]16471.0870.6138Yes
17HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]18650.9810.6221Yes
18XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]25550.7130.6138Yes
19BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]26740.6760.6204Yes
20ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]28970.6080.6233Yes
21SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]30540.5710.6273Yes
22WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]38220.3970.6124No
23PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]47560.2260.5904No
24CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]52740.1520.5787No
25ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]57300.0920.5677No
26SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]61500.0310.5569No
27SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]63590.0000.5513No
28CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]94670.0000.4674No
29CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]126040.0000.3827No
30TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]133970.0000.3613No
31NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]192020.0000.2046No
32LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]200780.0000.1810No
33IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]203510.0000.1736No
34RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]27257-0.025-0.0124No
35ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]27706-0.083-0.0233No
36BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]27787-0.093-0.0241No
37CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]28046-0.127-0.0293No
38APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]28150-0.140-0.0300No
39MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28525-0.189-0.0374No
40SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]28923-0.243-0.0446No
41FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]29072-0.265-0.0447No
42PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]29425-0.316-0.0497No
43NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]29800-0.368-0.0544No
44LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30540-0.478-0.0675No
45HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]30704-0.506-0.0645No
46RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]31417-0.631-0.0746No
47FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]31463-0.639-0.0666No
48TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]32135-0.794-0.0732No
49SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]33428-1.147-0.0915No
50SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]34838-1.690-0.1051No
51BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]35197-1.888-0.0874No
52TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]35794-2.310-0.0700No
53SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36750-3.438-0.0460No
54KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36913-3.8100.0048No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING