Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_UNFOLDED_PROTEIN_RESPONSE
Enrichment Score (ES)0.4981954
Normalized Enrichment Score (NES)1.3212543
Nominal p-value0.0
FDR q-value0.06252922
FWER p-Value0.13
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]84.9480.0477Yes
2DNAJB9DnaJ heat shock protein family (Hsp40) member B9 [Source:HGNC Symbol;Acc:HGNC:6968]2973.0300.0692Yes
3NABP1nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]3562.7490.0942Yes
4ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4092.5830.1178Yes
5HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]4892.3810.1387Yes
6CEBPBCCAAT enhancer binding protein beta [Source:HGNC Symbol;Acc:HGNC:1834]4902.3810.1618Yes
7DCP2decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]5792.1750.1804Yes
8SRPRASRP receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:11307]6312.1000.1994Yes
9RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]6971.9880.2169Yes
10WFS1wolframin ER transmembrane glycoprotein [Source:HGNC Symbol;Acc:HGNC:12762]7521.8950.2337Yes
11ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]7621.8780.2517Yes
12CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]7631.8750.2698Yes
13HERPUD1homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]7871.8310.2869Yes
14YWHAZtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]7921.8250.3045Yes
15ATF4activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]9791.5800.3147Yes
16FUSFUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]10451.5090.3276Yes
17SDAD1SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]12481.3540.3352Yes
18SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]12661.3380.3477Yes
19TATDN2TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]15231.1630.3520Yes
20SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]16511.0860.3591Yes
21MTHFD2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434]16961.0570.3681Yes
22DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]18240.9990.3744Yes
23CALRcalreticulin [Source:HGNC Symbol;Acc:HGNC:1455]18590.9830.3830Yes
24KIF5Bkinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]18930.9650.3914Yes
25IARS1isoleucyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:5330]19500.9370.3990Yes
26HYOU1hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931]19660.9290.4075Yes
27DCP1Adecapping mRNA 1A [Source:HGNC Symbol;Acc:HGNC:18714]19790.9250.4162Yes
28LSM1LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]21020.8770.4214Yes
29EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]21200.8690.4293Yes
30SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]22300.8250.4343Yes
31EIF4EBP1eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]22460.8190.4419Yes
32SRPRBSRP receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:24085]23780.7730.4458Yes
33BAG3BAG cochaperone 3 [Source:HGNC Symbol;Acc:HGNC:939]24230.7600.4520Yes
34TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]26270.6910.4532Yes
35CNOT4CCR4-NOT transcription complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:7880]27720.6450.4555Yes
36EXOSC1exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]28390.6250.4598Yes
37NOP14NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]29490.5910.4625Yes
38ARFGAP1ADP ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]31860.5370.4614Yes
39ZBTB17zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:HGNC:12936]34560.4700.4586Yes
40EXOSC4exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189]34760.4650.4626Yes
41TTC37tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]34940.4620.4666Yes
42HSPA9heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]35410.4520.4698Yes
43SEC11ASEC11 homolog A, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:17718]35770.4450.4731Yes
44BANF1BAF nuclear assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]37230.4150.4732Yes
45DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]38080.4000.4748Yes
46CNOT6CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]38460.3920.4776Yes
47EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]39130.3760.4795Yes
48VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]39150.3760.4831Yes
49POP4POP4 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30081]39190.3750.4866Yes
50EDC4enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]39650.3670.4890Yes
51DDX10DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735]40140.3570.4911Yes
52EXOSC10exosome component 10 [Source:HGNC Symbol;Acc:HGNC:9138]40190.3560.4945Yes
53CXXC1CXXC finger protein 1 [Source:HGNC Symbol;Acc:HGNC:24343]40760.3470.4963Yes
54TSPYL2TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]41270.3360.4982Yes
55YIF1AYip1 interacting factor homolog A, membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:16688]43030.3020.4964No
56DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]46340.2470.4898No
57DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]48560.2120.4859No
58PDIA6protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]51370.1710.4800No
59XPOTexportin for tRNA [Source:HGNC Symbol;Acc:HGNC:12826]51670.1660.4808No
60LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]51960.1620.4816No
61NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]53220.1450.4797No
62SSR1signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323]54970.1210.4761No
63EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]56650.1020.4726No
64EIF4G1eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]56930.0970.4728No
65SPCS1signal peptidase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23401]58210.0800.4702No
66CNOT2CCR4-NOT transcription complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:7878]59410.0630.4675No
67EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]60090.0530.4662No
68PDIA5protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]61630.0290.4624No
69SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]62030.0230.4615No
70IGFBP1insulin like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]117270.0000.3122No
71CCL2C-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]226840.0000.0159No
72XBP1X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]27305-0.035-0.1087No
73EXOSC2exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]27314-0.038-0.1085No
74NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]27558-0.067-0.1145No
75NHP2NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377]27652-0.075-0.1163No
76RPS14ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]28119-0.136-0.1275No
77KDELR3KDEL endoplasmic reticulum protein retention receptor 3 [Source:HGNC Symbol;Acc:HGNC:6306]28184-0.142-0.1279No
78SEC31ASEC31 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:17052]28344-0.163-0.1306No
79EIF4A2eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]28388-0.170-0.1301No
80NFYAnuclear transcription factor Y subunit alpha [Source:HGNC Symbol;Acc:HGNC:7804]28483-0.183-0.1309No
81MTREXMtr4 exosome RNA helicase [Source:HGNC Symbol;Acc:HGNC:18734]28501-0.185-0.1296No
82GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]28661-0.207-0.1319No
83PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]29101-0.268-0.1412No
84CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]29364-0.307-0.1453No
85STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]29695-0.353-0.1508No
86FKBP14FKBP prolyl isomerase 14 [Source:HGNC Symbol;Acc:HGNC:18625]29919-0.384-0.1531No
87NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]29932-0.388-0.1497No
88HSP90B1heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]29936-0.388-0.1460No
89EXOC2exocyst complex component 2 [Source:HGNC Symbol;Acc:HGNC:24968]30293-0.442-0.1513No
90ALDH18A1aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722]30765-0.517-0.1591No
91PAIP1poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16945]30863-0.535-0.1565No
92DCTN1dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]30880-0.537-0.1517No
93SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]30945-0.547-0.1482No
94ATF6activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]32105-0.787-0.1719No
95EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]32110-0.788-0.1644No
96PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]32111-0.788-0.1568No
97ATP6V0D1ATPase H+ transporting V0 subunit d1 [Source:HGNC Symbol;Acc:HGNC:13724]32302-0.834-0.1538No
98EEF2eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]32442-0.867-0.1492No
99EIF2AK3eukaryotic translation initiation factor 2 alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:3255]32797-0.962-0.1495No
100SLC30A5solute carrier family 30 member 5 [Source:HGNC Symbol;Acc:HGNC:19089]33058-1.035-0.1465No
101KHSRPKH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]33511-1.174-0.1473No
102IMP3IMP U3 small nucleolar ribonucleoprotein 3 [Source:HGNC Symbol;Acc:HGNC:14497]33870-1.293-0.1445No
103GEMIN4gem nuclear organelle associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]33961-1.326-0.1341No
104PARNpoly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]34496-1.538-0.1337No
105NFYBnuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805]34764-1.655-0.1249No
106EDEM1ER degradation enhancing alpha-mannosidase like protein 1 [Source:HGNC Symbol;Acc:HGNC:18967]34848-1.692-0.1107No
107CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]35148-1.850-0.1009No
108TUBB2Atubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]35390-2.007-0.0880No
109ERO1Aendoplasmic reticulum oxidoreductase 1 alpha [Source:HGNC Symbol;Acc:HGNC:13280]35421-2.027-0.0692No
110ERN1endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]35676-2.218-0.0546No
111EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]36005-2.504-0.0393No
112H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36206-2.726-0.0183No
113WIPI1WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]37037-4.3560.0014No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UNFOLDED_PROTEIN_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UNFOLDED_PROTEIN_RESPONSE