Datasetgreenberg_collapsed_to_symbols.greenbergcls.cls
#WT_LPS_versus_WT_NA.greenbergcls.cls
#WT_LPS_versus_WT_NA_repos
Phenotypegreenbergcls.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_UV_RESPONSE_UP
Enrichment Score (ES)0.38834572
Normalized Enrichment Score (NES)1.0569394
Nominal p-value0.22058824
FDR q-value0.3090247
FWER p-Value0.686
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UV_RESPONSE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1283.9190.0187Yes
2NR4A1nuclear receptor subfamily 4 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7980]1373.8780.0404Yes
3NFKBIANFKB inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:7797]1433.8280.0619Yes
4JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1463.8150.0835Yes
5FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1903.5330.1023Yes
6TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2013.4730.1217Yes
7SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2213.3630.1402Yes
8SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]2393.2740.1582Yes
9LYNLYN proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6735]3412.8160.1714Yes
10FOSBFosB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:3797]3712.6980.1859Yes
11SHOX2short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]3992.6020.1999Yes
12ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]4092.5830.2142Yes
13BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]5632.2190.2227Yes
14BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]5782.1760.2346Yes
15DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]6172.1160.2455Yes
16CHKAcholine kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]6232.1090.2573Yes
17HLA-Fmajor histocompatibility complex, class I, F [Source:HGNC Symbol;Acc:HGNC:4963]6432.0750.2685Yes
18STARD3StAR related lipid transfer domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17579]6752.0250.2792Yes
19IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]7041.9690.2895Yes
20BTG1BTG anti-proliferation factor 1 [Source:HGNC Symbol;Acc:HGNC:1130]7131.9600.3004Yes
21IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]7321.9300.3108Yes
22TFRCtransferrin receptor [Source:HGNC Symbol;Acc:HGNC:11763]7361.9200.3216Yes
23ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]7621.8780.3316Yes
24SELENOWselenoprotein W [Source:HGNC Symbol;Acc:HGNC:10752]8371.7410.3394Yes
25TMBIM6transmembrane BAX inhibitor motif containing 6 [Source:HGNC Symbol;Acc:HGNC:11723]9591.5950.3452Yes
26GLSglutaminase [Source:HGNC Symbol;Acc:HGNC:4331]10891.4840.3501Yes
27HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]12101.3800.3546Yes
28PLCL1phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]14691.1940.3544Yes
29MMP14matrix metallopeptidase 14 [Source:HGNC Symbol;Acc:HGNC:7160]15121.1690.3599Yes
30CYB5Bcytochrome b5 type B [Source:HGNC Symbol;Acc:HGNC:24374]16701.0730.3617Yes
31ALAS15'-aminolevulinate synthase 1 [Source:HGNC Symbol;Acc:HGNC:396]19860.9230.3584Yes
32YKT6YKT6 v-SNARE homolog [Source:HGNC Symbol;Acc:HGNC:16959]20030.9170.3631Yes
33FOSFos proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:3796]21900.8400.3628Yes
34EIF5eukaryotic translation initiation factor 5 [Source:HGNC Symbol;Acc:HGNC:3299]22740.8110.3652Yes
35KLHDC3kelch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20704]23520.7820.3675Yes
36CTSVcathepsin V [Source:HGNC Symbol;Acc:HGNC:2538]25480.7160.3663Yes
37DNAJB1DnaJ heat shock protein family (Hsp40) member B1 [Source:HGNC Symbol;Acc:HGNC:5270]25620.7120.3700Yes
38TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]26270.6910.3721Yes
39CYB5R1cytochrome b5 reductase 1 [Source:HGNC Symbol;Acc:HGNC:13397]26830.6740.3745Yes
40HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]27990.6380.3750Yes
41CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]28620.6180.3768Yes
42PRKCDprotein kinase C delta [Source:HGNC Symbol;Acc:HGNC:9399]29360.5950.3782Yes
43CDO1cysteine dioxygenase type 1 [Source:HGNC Symbol;Acc:HGNC:1795]29430.5920.3814Yes
44PRPF3pre-mRNA processing factor 3 [Source:HGNC Symbol;Acc:HGNC:17348]30020.5780.3830Yes
45LHX2LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]30430.5720.3852Yes
46ARRB2arrestin beta 2 [Source:HGNC Symbol;Acc:HGNC:712]31030.5570.3868Yes
47BAK1BCL2 antagonist/killer 1 [Source:HGNC Symbol;Acc:HGNC:949]32100.5290.3869Yes
48GRINAglutamate ionotropic receptor NMDA type subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:4589]33910.4840.3847Yes
49HNRNPUheterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]34730.4660.3852Yes
50DDX21DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]35080.4590.3869Yes
51MARK2microtubule affinity regulating kinase 2 [Source:HGNC Symbol;Acc:HGNC:3332]35480.4500.3883Yes
52PPIFpeptidylprolyl isomerase F [Source:HGNC Symbol;Acc:HGNC:9259]36960.4200.3867No
53PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]37520.4110.3876No
54BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]38790.3840.3863No
55PDAP1PDGFA associated protein 1 [Source:HGNC Symbol;Acc:HGNC:14634]40410.3520.3840No
56RASGRP1RAS guanyl releasing protein 1 [Source:HGNC Symbol;Acc:HGNC:9878]41670.3290.3824No
57COL2A1collagen type II alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2200]46980.2360.3694No
58STIP1stress induced phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11387]48000.2200.3679No
59SPRsepiapterin reductase [Source:HGNC Symbol;Acc:HGNC:11257]48620.2120.3675No
60CLTBclathrin light chain B [Source:HGNC Symbol;Acc:HGNC:2091]48770.2100.3683No
61AQP3aquaporin 3 (Gill blood group) [Source:HGNC Symbol;Acc:HGNC:636]49560.1980.3673No
62CA2carbonic anhydrase 2 [Source:HGNC Symbol;Acc:HGNC:1373]52830.1510.3593No
63WIZWIZ zinc finger [Source:HGNC Symbol;Acc:HGNC:30917]52900.1500.3600No
64RPN1ribophorin I [Source:HGNC Symbol;Acc:HGNC:10381]54420.1280.3567No
65FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]54950.1210.3559No
66GRPEL1GrpE like 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:19696]55550.1150.3550No
67MAPK8IP2mitogen-activated protein kinase 8 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:6883]59620.0590.3443No
68NUP58nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261]61790.0260.3386No
69HSPA13heat shock protein family A (Hsp70) member 13 [Source:HGNC Symbol;Acc:HGNC:11375]62210.0200.3376No
70C4BPBcomplement component 4 binding protein beta [Source:HGNC Symbol;Acc:HGNC:1328]72200.0000.3106No
71NPTX2neuronal pentraxin 2 [Source:HGNC Symbol;Acc:HGNC:7953]73700.0000.3066No
72GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]94970.0000.2490No
73ONECUT1one cut homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8138]98190.0000.2403No
74CYP1A1cytochrome P450 family 1 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2595]105810.0000.2197No
75NTRK3neurotrophic receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:8033]109230.0000.2105No
76IGFBP2insulin like growth factor binding protein 2 [Source:HGNC Symbol;Acc:HGNC:5471]117310.0000.1886No
77MSX1msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]124930.0000.1680No
78CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]126040.0000.1650No
79CDKN2Bcyclin dependent kinase inhibitor 2B [Source:HGNC Symbol;Acc:HGNC:1788]126270.0000.1645No
80TACR3tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]131660.0000.1499No
81HTR75-hydroxytryptamine receptor 7 [Source:HGNC Symbol;Acc:HGNC:5302]155160.0000.0863No
82CCKcholecystokinin [Source:HGNC Symbol;Acc:HGNC:1569]157270.0000.0806No
83GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]168310.0000.0507No
84PDLIM3PDZ and LIM domain 3 [Source:HGNC Symbol;Acc:HGNC:20767]176540.0000.0285No
85ICAM1intercellular adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5344]181430.0000.0153No
86NKX2-5NK2 homeobox 5 [Source:HGNC Symbol;Acc:HGNC:2488]190600.000-0.0095No
87TCHHtrichohyalin [Source:HGNC Symbol;Acc:HGNC:11791]196880.000-0.0265No
88RETret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]203150.000-0.0435No
89EPCAMepithelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:11529]242200.000-0.1492No
90CHRNA5cholinergic receptor nicotinic alpha 5 subunit [Source:HGNC Symbol;Acc:HGNC:1959]244810.000-0.1562No
91FMO1flavin containing dimethylaniline monoxygenase 1 [Source:HGNC Symbol;Acc:HGNC:3769]267750.000-0.2183No
92CDC34cell division cycle 34, ubiqiutin conjugating enzyme [Source:HGNC Symbol;Acc:HGNC:1734]27201-0.015-0.2297No
93PPP1R2protein phosphatase 1 regulatory inhibitor subunit 2 [Source:HGNC Symbol;Acc:HGNC:9288]27515-0.061-0.2379No
94GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]27557-0.067-0.2386No
95KCNH2potassium voltage-gated channel subfamily H member 2 [Source:HGNC Symbol;Acc:HGNC:6251]27996-0.122-0.2498No
96TYRO3TYRO3 protein tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:12446]28252-0.152-0.2558No
97BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]28611-0.201-0.2644No
98APOMapolipoprotein M [Source:HGNC Symbol;Acc:HGNC:13916]28897-0.241-0.2707No
99AP2S1adaptor related protein complex 2 subunit sigma 1 [Source:HGNC Symbol;Acc:HGNC:565]28950-0.246-0.2707No
100ATP6V1FATPase H+ transporting V1 subunit F [Source:HGNC Symbol;Acc:HGNC:16832]29330-0.300-0.2793No
101CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]29364-0.307-0.2785No
102SULT1A1sulfotransferase family 1A member 1 [Source:HGNC Symbol;Acc:HGNC:11453]29429-0.317-0.2784No
103TGFBRAP1transforming growth factor beta receptor associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16836]29940-0.389-0.2900No
104STK25serine/threonine kinase 25 [Source:HGNC Symbol;Acc:HGNC:11404]30114-0.415-0.2923No
105ATP6V1C1ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]30161-0.423-0.2912No
106MGAT1alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:7044]30910-0.542-0.3084No
107PTPRDprotein tyrosine phosphatase receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]30978-0.552-0.3071No
108CDC5Lcell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]31145-0.581-0.3083No
109NXF1nuclear RNA export factor 1 [Source:HGNC Symbol;Acc:HGNC:8071]31254-0.600-0.3078No
110AMD1adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:457]31324-0.611-0.3062No
111POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]31606-0.672-0.3100No
112CLCN2chloride voltage-gated channel 2 [Source:HGNC Symbol;Acc:HGNC:2020]31679-0.686-0.3081No
113EIF2S3eukaryotic translation initiation factor 2 subunit gamma [Source:HGNC Symbol;Acc:HGNC:3267]31682-0.687-0.3043No
114POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]31733-0.694-0.3017No
115SLC6A8solute carrier family 6 member 8 [Source:HGNC Symbol;Acc:HGNC:11055]31890-0.735-0.3018No
116FKBP4FKBP prolyl isomerase 4 [Source:HGNC Symbol;Acc:HGNC:3720]32156-0.799-0.3044No
117TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]32259-0.821-0.3025No
118AGO2argonaute RISC catalytic component 2 [Source:HGNC Symbol;Acc:HGNC:3263]32269-0.824-0.2981No
119PPATphosphoribosyl pyrophosphate amidotransferase [Source:HGNC Symbol;Acc:HGNC:9238]32330-0.840-0.2950No
120CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]32976-1.008-0.3068No
121CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33249-1.089-0.3080No
122MAOAmonoamine oxidase A [Source:HGNC Symbol;Acc:HGNC:6833]33421-1.145-0.3061No
123E2F5E2F transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:3119]33640-1.214-0.3052No
124RXRBretinoid X receptor beta [Source:HGNC Symbol;Acc:HGNC:10478]33814-1.274-0.3026No
125NPTXRneuronal pentraxin receptor [Source:HGNC Symbol;Acc:HGNC:7954]33856-1.288-0.2965No
126NAT1N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7645]33857-1.289-0.2892No
127SIGMAR1sigma non-opioid intracellular receptor 1 [Source:HGNC Symbol;Acc:HGNC:8157]33924-1.314-0.2835No
128MRPL23mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]34018-1.348-0.2784No
129FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]34079-1.367-0.2723No
130PARP2poly(ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]34123-1.384-0.2656No
131POLG2DNA polymerase gamma 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9180]34172-1.399-0.2590No
132CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]34218-1.417-0.2522No
133CCNE1cyclin E1 [Source:HGNC Symbol;Acc:HGNC:1589]34333-1.473-0.2470No
134ABCB1ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]34365-1.485-0.2394No
135BSGbasigin (Ok blood group) [Source:HGNC Symbol;Acc:HGNC:1116]34381-1.493-0.2314No
136DGAT1diacylglycerol O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2843]34466-1.528-0.2250No
137TSTthiosulfate sulfurtransferase [Source:HGNC Symbol;Acc:HGNC:12388]34486-1.534-0.2169No
138SLC25A4solute carrier family 25 member 4 [Source:HGNC Symbol;Acc:HGNC:10990]34652-1.608-0.2122No
139RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]34715-1.633-0.2047No
140IL6STinterleukin 6 signal transducer [Source:HGNC Symbol;Acc:HGNC:6021]34921-1.730-0.2005No
141ALDOAaldolase, fructose-bisphosphate A [Source:HGNC Symbol;Acc:HGNC:414]35132-1.839-0.1957No
142BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]35197-1.888-0.1868No
143SLC6A12solute carrier family 6 member 12 [Source:HGNC Symbol;Acc:HGNC:11045]35325-1.963-0.1791No
144PRKACAprotein kinase cAMP-activated catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9380]35432-2.038-0.1705No
145PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35577-2.137-0.1623No
146ACAA1acetyl-CoA acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:82]35654-2.203-0.1519No
147CREG1cellular repressor of E1A stimulated genes 1 [Source:HGNC Symbol;Acc:HGNC:2351]35657-2.205-0.1395No
148URODuroporphyrinogen decarboxylase [Source:HGNC Symbol;Acc:HGNC:12591]35694-2.226-0.1278No
149DLG4discs large MAGUK scaffold protein 4 [Source:HGNC Symbol;Acc:HGNC:2903]35770-2.295-0.1169No
150RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35861-2.370-0.1059No
151CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35868-2.378-0.0926No
152OLFM1olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]35985-2.488-0.0817No
153ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36077-2.583-0.0696No
154HSPA2heat shock protein family A (Hsp70) member 2 [Source:HGNC Symbol;Acc:HGNC:5235]36143-2.659-0.0563No
155H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36206-2.726-0.0425No
156RAB27ARAB27A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9766]36779-3.487-0.0383No
157RRADRRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:HGNC Symbol;Acc:HGNC:10446]36992-4.103-0.0208No
158EPHX1epoxide hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3401]37001-4.1480.0024No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UV_RESPONSE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UV_RESPONSE_UP: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UV_RESPONSE_UP