Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetLEE_EARLY_T_LYMPHOCYTE_UP
Enrichment Score (ES)-0.8212082
Normalized Enrichment Score (NES)-1.7322195
Nominal p-value0.0
FDR q-value4.7289516E-4
FWER p-Value0.003
Table: GSEA Results Summary



Fig 1: Enrichment plot: LEE_EARLY_T_LYMPHOCYTE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RAPGEF5Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]10841.407-0.0203No
2SYKspleen associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11491]11941.334-0.0146No
3CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]15041.154-0.0156No
4CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]17571.033-0.0157No
5AEBP1AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]19690.950-0.0153No
6SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]25850.737-0.0272No
7GALNT7polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]31260.602-0.0380No
8CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]32220.578-0.0368No
9GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]34350.527-0.0392No
10LDLRAD4low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]34370.527-0.0358No
11PON1paraoxonase 1 [Source:HGNC Symbol;Acc:HGNC:9204]40160.412-0.0488No
12PALLDpalladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]48460.269-0.0695No
13FAIMFas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:HGNC:18703]58180.121-0.0949No
14MIR646HGMIR646 host gene [Source:HGNC Symbol;Acc:HGNC:27659]82580.000-0.1609No
15HHIPhedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]83330.000-0.1629No
16TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]94510.000-0.1931No
17RAG1recombination activating 1 [Source:HGNC Symbol;Acc:HGNC:9831]126650.000-0.2800No
18SCRN1secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]142310.000-0.3223No
19MZB1marginal zone B and B1 cell specific protein [Source:HGNC Symbol;Acc:HGNC:30125]148330.000-0.3385No
20ARPP21cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]210320.000-0.5061No
21TSHRthyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]222080.000-0.5379No
22FAM72Cfamily with sequence similarity 72 member C [Source:HGNC Symbol;Acc:HGNC:30602]224990.000-0.5457No
23CD1ECD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]231200.000-0.5625No
24CD1BCD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]231230.000-0.5626No
25CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]231240.000-0.5626No
26CD99CD99 molecule (Xg blood group) [Source:HGNC Symbol;Acc:HGNC:7082]232610.000-0.5662No
27CPVLcarboxypeptidase vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]239450.000-0.5847No
28CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]243010.000-0.5943No
29NLGN4Xneuroligin 4 X-linked [Source:HGNC Symbol;Acc:HGNC:14287]257540.000-0.6336No
30PALM2AKAP2PALM2 and AKAP2 fusion [Source:HGNC Symbol;Acc:HGNC:33529]27775-0.000-0.6882No
31PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]27831-0.006-0.6896No
32CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]27912-0.021-0.6917No
33GSE1Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]27992-0.029-0.6936No
34GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]28114-0.049-0.6966No
35PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]28646-0.123-0.7101No
36MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]28989-0.170-0.7183No
37GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]29206-0.201-0.7228No
38DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]29469-0.240-0.7284No
39TMSB15Athymosin beta 15a [Source:HGNC Symbol;Acc:HGNC:30744]30211-0.343-0.7462No
40CRNDEcolorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]30993-0.461-0.7644No
41TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]31056-0.470-0.7630No
42LETM1leucine zipper and EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6556]31097-0.476-0.7610No
43MCM10minichromosome maintenance 10 replication initiation factor [Source:HGNC Symbol;Acc:HGNC:18043]31158-0.486-0.7595No
44NSD2nuclear receptor binding SET domain protein 2 [Source:HGNC Symbol;Acc:HGNC:12766]32214-0.686-0.7836No
45RCAN1regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]32362-0.712-0.7830No
46AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]32625-0.776-0.7851No
47TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32700-0.796-0.7820No
48CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]33479-1.012-0.7965No
49KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]33771-1.101-0.7973No
50MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34655-1.411-0.8121Yes
51PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34665-1.416-0.8033Yes
52KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]34826-1.475-0.7981Yes
53DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]34894-1.508-0.7902Yes
54PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]34952-1.544-0.7818Yes
55DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]34999-1.564-0.7730Yes
56FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]35012-1.573-0.7632Yes
57DSCC1DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]35083-1.617-0.7547Yes
58RUFY3RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]35302-1.732-0.7495Yes
59UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]35315-1.737-0.7387Yes
60PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]35527-1.854-0.7324Yes
61KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]35530-1.855-0.7206Yes
62E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]35545-1.864-0.7090Yes
63ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35626-1.922-0.6988Yes
64CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]35638-1.929-0.6867Yes
65BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]35645-1.933-0.6744Yes
66CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]35659-1.943-0.6623Yes
67HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]35723-1.996-0.6511Yes
68UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]35736-2.006-0.6386Yes
69LRR1leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]35751-2.018-0.6260Yes
70CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]35816-2.070-0.6144Yes
71MPP1membrane palmitoylated protein 1 [Source:HGNC Symbol;Acc:HGNC:7219]35864-2.106-0.6021Yes
72BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]35889-2.122-0.5891Yes
73UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]35897-2.126-0.5756Yes
74MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]35912-2.142-0.5622Yes
75KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]35930-2.153-0.5489Yes
76MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]35935-2.155-0.5351Yes
77TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35959-2.181-0.5217Yes
78TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]35968-2.186-0.5079Yes
79NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]36024-2.225-0.4951Yes
80TUBBtubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]36040-2.235-0.4811Yes
81CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36081-2.263-0.4676Yes
82HMGB3high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]36099-2.278-0.4534Yes
83KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]36145-2.317-0.4398Yes
84KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]36238-2.399-0.4268Yes
85BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36249-2.411-0.4116Yes
86KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]36265-2.434-0.3964Yes
87MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]36289-2.458-0.3812Yes
88NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36304-2.474-0.3657Yes
89SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]36311-2.482-0.3499Yes
90NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36360-2.539-0.3348Yes
91CEP128centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]36375-2.556-0.3188Yes
92ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]36387-2.570-0.3025Yes
93CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]36433-2.620-0.2869Yes
94RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]36458-2.656-0.2705Yes
95GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]36505-2.720-0.2543Yes
96NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36555-2.800-0.2376Yes
97CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]36562-2.813-0.2197Yes
98CXXC5CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]36564-2.819-0.2016Yes
99CEP70centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]36573-2.835-0.1836Yes
100NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36620-2.903-0.1661Yes
101E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36622-2.908-0.1475Yes
102RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36679-3.000-0.1297Yes
103ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36747-3.148-0.1113Yes
104OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]36858-3.461-0.0920Yes
105DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36872-3.490-0.0699Yes
106NEIL3nei like DNA glycosylase 3 [Source:HGNC Symbol;Acc:HGNC:24573]36921-3.644-0.0478Yes
107E2F2E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]36937-3.731-0.0242Yes
108TFDP2transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]37064-4.3990.0007Yes
Table: GSEA details [plain text format]



Fig 2: LEE_EARLY_T_LYMPHOCYTE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LEE_EARLY_T_LYMPHOCYTE_UP: Random ES distribution   
Gene set null distribution of ES for LEE_EARLY_T_LYMPHOCYTE_UP