Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.46910357
Normalized Enrichment Score (NES)1.267578
Nominal p-value0.025
FDR q-value0.10029797
FWER p-Value0.524
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]134.7400.0278Yes
2MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]184.5780.0549Yes
3ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]274.4390.0810Yes
4ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]294.4170.1072Yes
5BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]324.4020.1333Yes
6CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]394.2690.1585Yes
7ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]753.7370.1797Yes
8EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]763.7350.2019Yes
9JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1163.3630.2208Yes
10TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]1403.2010.2392Yes
11ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]1683.0670.2566Yes
12STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]2422.7560.2710Yes
13RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]3652.3450.2816Yes
14GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]3842.2940.2948Yes
15SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]4922.0960.3043Yes
16MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]6611.8350.3107Yes
17NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]6621.8340.3215Yes
18RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]6991.8000.3313Yes
19SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]8701.5880.3361Yes
20ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]8711.5870.3455Yes
21ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]9051.5490.3538Yes
22BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]10791.4100.3575Yes
23BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]11051.3920.3651Yes
24TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]11411.3700.3723Yes
25KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]12231.3160.3779Yes
26TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]13341.2530.3823Yes
27GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]14371.1860.3866Yes
28C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]14451.1780.3934Yes
29WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]15011.1550.3988Yes
30ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]15231.1460.4050Yes
31RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]16431.0880.4083Yes
32FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]16671.0780.4140Yes
33EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]17411.0430.4182Yes
34PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]17611.0320.4239Yes
35NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]17751.0250.4296Yes
36ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]20170.9280.4286Yes
37GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]20200.9270.4340Yes
38UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]20580.9140.4384Yes
39TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]20900.8980.4429Yes
40MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]23430.8110.4409Yes
41DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]23760.7990.4448Yes
42TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]24580.7780.4472Yes
43ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]24910.7680.4509Yes
44ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]27360.6980.4484Yes
45MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]27930.6840.4510Yes
46PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]28400.6720.4537Yes
47EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]30360.6220.4521Yes
48GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]31680.5910.4521Yes
49TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]31790.5880.4553Yes
50FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]32400.5730.4571Yes
51USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]32610.5690.4599Yes
52LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]32760.5660.4629Yes
53NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]34620.5210.4610Yes
54LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]35080.5100.4628Yes
55BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]36010.4930.4632Yes
56BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]38160.4520.4601Yes
57APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]38420.4470.4621Yes
58UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]39030.4350.4630Yes
59REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]39380.4280.4647Yes
60LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]39800.4190.4660Yes
61SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]40470.4080.4667Yes
62PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]41280.3940.4669Yes
63ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]42120.3770.4668Yes
64BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]42460.3710.4681Yes
65CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]43330.3550.4679Yes
66GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]43670.3490.4691Yes
67MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]46680.3020.4628No
68PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]49520.2510.4566No
69SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]49930.2450.4570No
70LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]52500.2010.4512No
71HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]54350.1710.4472No
72MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]54500.1690.4479No
73SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]54880.1640.4478No
74UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]58970.1080.4374No
75EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]65040.0100.4211No
76FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]71230.0000.4043No
77FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]71280.0000.4042No
78TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]88150.0000.3586No
79DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]93490.0000.3441No
80C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]94880.0000.3404No
81ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]98990.0000.3293No
82NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]100320.0000.3257No
83NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]109860.0000.2999No
84CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]111180.0000.2963No
85ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]116240.0000.2827No
86IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]119240.0000.2746No
87PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]121330.0000.2689No
88TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]126630.0000.2546No
89GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]129560.0000.2467No
90ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]134180.0000.2342No
91SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]138460.0000.2226No
92TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]143930.0000.2078No
93SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]160100.0000.1641No
94FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]170330.0000.1364No
95RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]170350.0000.1364No
96VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]173790.0000.1271No
97PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176900.0000.1187No
98DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]185170.0000.0963No
99BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]191020.0000.0805No
100RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]203650.0000.0463No
101INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]203770.0000.0460No
102TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]205310.0000.0419No
103KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]206730.0000.0380No
104SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]208450.0000.0334No
105SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]215040.0000.0156No
106C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]220370.0000.0012No
107CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]231000.000-0.0276No
108FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]238450.000-0.0477No
109LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]239100.000-0.0495No
110LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]239320.000-0.0500No
111LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]241750.000-0.0566No
112ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]261930.000-0.1112No
113GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]270710.000-0.1350No
114AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]275550.000-0.1481No
115MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]277170.000-0.1524No
116DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]27810-0.004-0.1549No
117MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]27947-0.028-0.1584No
118B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]28053-0.039-0.1610No
119MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]28161-0.058-0.1636No
120LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]28669-0.128-0.1766No
121ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]28693-0.131-0.1764No
122CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]28806-0.144-0.1786No
123TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]28809-0.145-0.1778No
124DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]29037-0.177-0.1829No
125TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]29208-0.202-0.1863No
126TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]29242-0.208-0.1860No
127GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]29463-0.239-0.1905No
128STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]29605-0.258-0.1928No
129RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]29709-0.274-0.1939No
130UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]29844-0.295-0.1958No
131EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]29956-0.310-0.1970No
132DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]30123-0.332-0.1995No
133VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]30271-0.350-0.2014No
134MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]30586-0.399-0.2075No
135ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]30622-0.406-0.2061No
136DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]31371-0.521-0.2232No
137CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]31531-0.551-0.2243No
138ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]31789-0.595-0.2277No
139RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]31971-0.634-0.2288No
140ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]32049-0.651-0.2271No
141NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]32102-0.663-0.2245No
142FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]32481-0.740-0.2304No
143QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]32823-0.828-0.2347No
144RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]33050-0.885-0.2356No
145KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33123-0.904-0.2322No
146ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]33170-0.918-0.2280No
147PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]33373-0.978-0.2276No
148ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]33515-1.025-0.2254No
149DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]33684-1.074-0.2235No
150TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]34108-1.212-0.2278No
151PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]34180-1.238-0.2224No
152TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]34184-1.239-0.2151No
153RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]34378-1.310-0.2125No
154CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]34508-1.357-0.2080No
155SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]34597-1.390-0.2021No
156DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]34980-1.556-0.2032No
157MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]35121-1.637-0.1973No
158CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]35507-1.841-0.1968No
159ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]35557-1.870-0.1870No
160ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]35622-1.920-0.1774No
161H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]35683-1.962-0.1673No
162NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]35812-2.067-0.1585No
163RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]35840-2.081-0.1469No
164AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]35924-2.150-0.1364No
165CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]36144-2.316-0.1286No
166HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]36226-2.390-0.1166No
167VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]36399-2.583-0.1059No
168TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36404-2.593-0.0906No
169RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36656-2.958-0.0798No
170TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36847-3.408-0.0648No
171TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36864-3.474-0.0446No
172REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]37028-4.148-0.0244No
173KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]37061-4.3820.0008No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN