Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetRB_DN.V1_DN
Enrichment Score (ES)0.52080697
Normalized Enrichment Score (NES)1.3517911
Nominal p-value0.008
FDR q-value0.078355044
FWER p-Value0.299
Table: GSEA Results Summary



Fig 1: Enrichment plot: RB_DN.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TNCtenascin C [Source:HGNC Symbol;Acc:HGNC:5318]214.5400.0439Yes
2CISHcytokine inducible SH2 containing protein [Source:HGNC Symbol;Acc:HGNC:1984]254.4610.0874Yes
3FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]354.3350.1296Yes
4PDGFBplatelet derived growth factor subunit B [Source:HGNC Symbol;Acc:HGNC:8800]474.1310.1697Yes
5USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]683.8160.2065Yes
6CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]1922.9330.2319Yes
7CTSCcathepsin C [Source:HGNC Symbol;Acc:HGNC:2528]2532.7230.2569Yes
8NOCTnocturnin [Source:HGNC Symbol;Acc:HGNC:14254]4432.1740.2731Yes
9HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]5511.9900.2896Yes
10LGALS9galectin 9 [Source:HGNC Symbol;Acc:HGNC:6570]6321.8680.3058Yes
11FLNAfilamin A [Source:HGNC Symbol;Acc:HGNC:3754]6811.8200.3223Yes
12MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]8251.6300.3344Yes
13GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]8401.6190.3498Yes
14ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]9051.5490.3632Yes
15CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]9921.4770.3754Yes
16CD9CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]9951.4740.3897Yes
17UROSuroporphyrinogen III synthase [Source:HGNC Symbol;Acc:HGNC:12592]12441.3030.3958Yes
18PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]12661.2910.4078Yes
19ANKFY1ankyrin repeat and FYVE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20763]15241.1450.4121Yes
20MVPmajor vault protein [Source:HGNC Symbol;Acc:HGNC:7531]16021.1130.4209Yes
21MMP13matrix metallopeptidase 13 [Source:HGNC Symbol;Acc:HGNC:7159]16141.1050.4314Yes
22DYNLL1dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]17321.0470.4385Yes
23SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]19140.9700.4431Yes
24PSMB10proteasome 20S subunit beta 10 [Source:HGNC Symbol;Acc:HGNC:9538]19770.9490.4507Yes
25MSMO1methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:HGNC:10545]20820.8990.4567Yes
26PRKAR1Aprotein kinase cAMP-dependent type I regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9388]20920.8970.4652Yes
27DDX3YDEAD-box helicase 3 Y-linked [Source:HGNC Symbol;Acc:HGNC:2699]21620.8750.4719Yes
28CDIPTCDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:HGNC Symbol;Acc:HGNC:1769]21730.8710.4802Yes
29PPP2R1Bprotein phosphatase 2 scaffold subunit Abeta [Source:HGNC Symbol;Acc:HGNC:9303]22070.8610.4877Yes
30BCCIPBRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]23060.8250.4931Yes
31UBA5ubiquitin like modifier activating enzyme 5 [Source:HGNC Symbol;Acc:HGNC:23230]23550.8080.4997Yes
32BASP1brain abundant membrane attached signal protein 1 [Source:HGNC Symbol;Acc:HGNC:957]23740.8000.5071Yes
33PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]23750.8000.5149Yes
34NFIL3nuclear factor, interleukin 3 regulated [Source:HGNC Symbol;Acc:HGNC:7787]27550.6920.5114Yes
35MYADMmyeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]29910.6320.5112Yes
36CAP1cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]32310.5760.5104Yes
37SARAFstore-operated calcium entry associated regulatory factor [Source:HGNC Symbol;Acc:HGNC:28789]33360.5530.5130Yes
38SH3BP5LSH3 binding domain protein 5 like [Source:HGNC Symbol;Acc:HGNC:29360]33600.5480.5178Yes
39EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]36370.4860.5151Yes
40TMEM42transmembrane protein 42 [Source:HGNC Symbol;Acc:HGNC:28444]36730.4780.5188Yes
41FEZ2fasciculation and elongation protein zeta 2 [Source:HGNC Symbol;Acc:HGNC:3660]37650.4590.5208Yes
42NKAPNFKB activating protein [Source:HGNC Symbol;Acc:HGNC:29873]40730.4040.5165No
43ARL1ADP ribosylation factor like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:692]41520.3910.5182No
44STARD3NLSTARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]44440.3360.5136No
45LAMTOR3late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:HGNC:15606]44910.3290.5156No
46UNC119Bunc-119 lipid binding chaperone B [Source:HGNC Symbol;Acc:HGNC:16488]45900.3120.5160No
47AGRNagrin [Source:HGNC Symbol;Acc:HGNC:329]47660.2850.5140No
48EFL1elongation factor like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:25789]47780.2830.5165No
49PDCD6programmed cell death 6 [Source:HGNC Symbol;Acc:HGNC:8765]48710.2650.5166No
50ADAMTS1ADAM metallopeptidase with thrombospondin type 1 motif 1 [Source:HGNC Symbol;Acc:HGNC:217]49660.2490.5165No
51SLCO2A1solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955]52130.2060.5119No
52TMCC3transmembrane and coiled-coil domain family 3 [Source:HGNC Symbol;Acc:HGNC:29199]53910.1770.5088No
53ANKRD40ankyrin repeat domain 40 [Source:HGNC Symbol;Acc:HGNC:28233]56880.1390.5022No
54P4HA1prolyl 4-hydroxylase subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8546]57540.1290.5017No
55MICAL2microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24693]63130.0390.4870No
56SLC7A3solute carrier family 7 member 3 [Source:HGNC Symbol;Acc:HGNC:11061]63970.0260.4850No
57DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]64460.0230.4839No
58SMIM3small integral membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:30248]67320.0000.4762No
59CALCBcalcitonin related polypeptide beta [Source:HGNC Symbol;Acc:HGNC:1438]89530.0000.4161No
60LCE5Alate cornified envelope 5A [Source:HGNC Symbol;Acc:HGNC:16614]95660.0000.3996No
61RASL11BRAS like family 11 member B [Source:HGNC Symbol;Acc:HGNC:23804]99170.0000.3901No
62ADAM12ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]101060.0000.3850No
63PPBPpro-platelet basic protein [Source:HGNC Symbol;Acc:HGNC:9240]111310.0000.3573No
64ACKR3atypical chemokine receptor 3 [Source:HGNC Symbol;Acc:HGNC:23692]112490.0000.3542No
65C10orf99chromosome 10 open reading frame 99 [Source:HGNC Symbol;Acc:HGNC:31428]112890.0000.3531No
66S100A16S100 calcium binding protein A16 [Source:HGNC Symbol;Acc:HGNC:20441]118490.0000.3380No
67IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]119240.0000.3360No
68AGR3anterior gradient 3, protein disulphide isomerase family member [Source:HGNC Symbol;Acc:HGNC:24167]122420.0000.3274No
69BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]126080.0000.3175No
70MOXD1monooxygenase DBH like 1 [Source:HGNC Symbol;Acc:HGNC:21063]131480.0000.3029No
71IL33interleukin 33 [Source:HGNC Symbol;Acc:HGNC:16028]139690.0000.2808No
72TLL1tolloid like 1 [Source:HGNC Symbol;Acc:HGNC:11843]142770.0000.2725No
73DKK3dickkopf WNT signaling pathway inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:2893]164230.0000.2144No
74H19H19 imprinted maternally expressed transcript [Source:HGNC Symbol;Acc:HGNC:4713]171870.0000.1938No
75S1PR5sphingosine-1-phosphate receptor 5 [Source:HGNC Symbol;Acc:HGNC:14299]180250.0000.1712No
76BNC1basonuclin 1 [Source:HGNC Symbol;Acc:HGNC:1081]192930.0000.1369No
77GJB2gap junction protein beta 2 [Source:HGNC Symbol;Acc:HGNC:4284]210360.0000.0898No
78F2RL1F2R like trypsin receptor 1 [Source:HGNC Symbol;Acc:HGNC:3538]212860.0000.0830No
79IRX4iroquois homeobox 4 [Source:HGNC Symbol;Acc:HGNC:6129]220030.0000.0637No
80CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]224690.0000.0511No
81LRRC4leucine rich repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:15586]229170.0000.0390No
82LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]239100.0000.0122No
83LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]239400.0000.0114No
84C18orf32chromosome 18 open reading frame 32 [Source:HGNC Symbol;Acc:HGNC:31690]247210.000-0.0097No
85CST9cystatin 9 [Source:HGNC Symbol;Acc:HGNC:13261]249260.000-0.0152No
86WNT3Wnt family member 3 [Source:HGNC Symbol;Acc:HGNC:12782]253340.000-0.0263No
87FHL1four and a half LIM domains 1 [Source:HGNC Symbol;Acc:HGNC:3702]260930.000-0.0468No
88ST8SIA2ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10870]272690.000-0.0785No
89SQLEsqualene epoxidase [Source:HGNC Symbol;Acc:HGNC:11279]27919-0.023-0.0959No
90TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]27986-0.029-0.0974No
91HS3ST1heparan sulfate-glucosamine 3-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5194]28084-0.044-0.0996No
92GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]28282-0.075-0.1042No
93RPS2ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]28526-0.106-0.1097No
94DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]28969-0.166-0.1200No
95LMAN1lectin, mannose binding 1 [Source:HGNC Symbol;Acc:HGNC:6631]29016-0.173-0.1196No
96CELSR1cadherin EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:HGNC:1850]29111-0.186-0.1203No
97TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]29395-0.231-0.1257No
98NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]29527-0.245-0.1268No
99SEC23ASec23 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:10701]29885-0.302-0.1335No
100H2BC14H2B clustered histone 14 [Source:HGNC Symbol;Acc:HGNC:4750]31302-0.510-0.1669No
101STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]31438-0.533-0.1653No
102LIFRLIF receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:6597]31567-0.557-0.1633No
103TMEM50Btransmembrane protein 50B [Source:HGNC Symbol;Acc:HGNC:1280]31608-0.562-0.1589No
104ANXA11annexin A11 [Source:HGNC Symbol;Acc:HGNC:535]32308-0.704-0.1709No
105RHOVras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]32613-0.775-0.1716No
106CTNNAL1catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]32702-0.796-0.1662No
107CREB3L2cAMP responsive element binding protein 3 like 2 [Source:HGNC Symbol;Acc:HGNC:23720]33134-0.908-0.1689No
108PMVKphosphomevalonate kinase [Source:HGNC Symbol;Acc:HGNC:9141]33177-0.920-0.1611No
109NSDHLNAD(P) dependent steroid dehydrogenase-like [Source:HGNC Symbol;Acc:HGNC:13398]33600-1.049-0.1622No
110CYTH1cytohesin 1 [Source:HGNC Symbol;Acc:HGNC:9501]33717-1.082-0.1548No
111DNAJC4DnaJ heat shock protein family (Hsp40) member C4 [Source:HGNC Symbol;Acc:HGNC:5271]33929-1.160-0.1491No
112CDC42SE2CDC42 small effector 2 [Source:HGNC Symbol;Acc:HGNC:18547]34019-1.190-0.1399No
113TRAPPC12trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]34092-1.207-0.1300No
114MYORGmyogenesis regulating glycosidase (putative) [Source:HGNC Symbol;Acc:HGNC:19918]34592-1.388-0.1299No
115PLXNA2plexin A2 [Source:HGNC Symbol;Acc:HGNC:9100]35001-1.564-0.1257No
116BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]35081-1.617-0.1120No
117DUSP14dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]35138-1.646-0.0974No
118ANXA6annexin A6 [Source:HGNC Symbol;Acc:HGNC:544]35382-1.767-0.0867No
119H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]35683-1.962-0.0756No
120FAM102Afamily with sequence similarity 102 member A [Source:HGNC Symbol;Acc:HGNC:31419]36107-2.286-0.0647No
121NDRG1N-myc downstream regulated 1 [Source:HGNC Symbol;Acc:HGNC:7679]36464-2.668-0.0482No
122COL18A1collagen type XVIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2195]36596-2.878-0.0236No
123RB1RB transcriptional corepressor 1 [Source:HGNC Symbol;Acc:HGNC:9884]36945-3.7730.0039No
Table: GSEA details [plain text format]



Fig 2: RB_DN.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: RB_DN.V1_DN: Random ES distribution   
Gene set null distribution of ES for RB_DN.V1_DN