Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetRB_DN.V1_UP
Enrichment Score (ES)-0.6568143
Normalized Enrichment Score (NES)-1.40919
Nominal p-value0.0034207525
FDR q-value0.07160504
FWER p-Value0.482
Table: GSEA Results Summary



Fig 1: Enrichment plot: RB_DN.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]184.5780.0317No
2ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]274.4390.0627No
3PLA2G6phospholipase A2 group VI [Source:HGNC Symbol;Acc:HGNC:9039]3832.2960.0692No
4BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]4772.1190.0816No
5IER2immediate early response 2 [Source:HGNC Symbol;Acc:HGNC:28871]6771.8240.0890No
6GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]7731.6990.0984No
7ZSCAN22zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:HGNC:4929]8051.6570.1092No
8FBP1fructose-bisphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3606]11871.3370.1083No
9ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]18111.0120.0986No
10MDM2MDM2 proto-oncogene [Source:HGNC Symbol;Acc:HGNC:6973]18590.9940.1043No
11PRKAB1protein kinase AMP-activated non-catalytic subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:9378]19550.9580.1085No
12TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]20900.8980.1111No
13SLC7A7solute carrier family 7 member 7 [Source:HGNC Symbol;Acc:HGNC:11065]24590.7780.1067No
14MAN1B1mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]30450.6210.0952No
15NXT1nuclear transport factor 2 like export factor 1 [Source:HGNC Symbol;Acc:HGNC:15913]47640.2850.0507No
16DNAJC9DnaJ heat shock protein family (Hsp40) member C9 [Source:HGNC Symbol;Acc:HGNC:19123]49560.2500.0473No
17PRKCEprotein kinase C epsilon [Source:HGNC Symbol;Acc:HGNC:9401]52910.1940.0397No
18ADGRE1adhesion G protein-coupled receptor E1 [Source:HGNC Symbol;Acc:HGNC:3336]58830.1100.0244No
19POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]62640.0470.0145No
20FXYD6FXYD domain containing ion transport regulator 6 [Source:HGNC Symbol;Acc:HGNC:4030]68750.000-0.0020No
21HES1hes family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:5192]74150.000-0.0166No
22HEY2hes related family bHLH transcription factor with YRPW motif 2 [Source:HGNC Symbol;Acc:HGNC:4881]75160.000-0.0193No
23ARTNartemin [Source:HGNC Symbol;Acc:HGNC:727]76970.000-0.0241No
24TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]90540.000-0.0608No
25TNFRSF18TNF receptor superfamily member 18 [Source:HGNC Symbol;Acc:HGNC:11914]94440.000-0.0713No
26GRB7growth factor receptor bound protein 7 [Source:HGNC Symbol;Acc:HGNC:4567]100410.000-0.0875No
27PKHD1PKHD1 ciliary IPT domain containing fibrocystin/polyductin [Source:HGNC Symbol;Acc:HGNC:9016]100430.000-0.0875No
28GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]101420.000-0.0901No
29OVOL2ovo like zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:15804]108840.000-0.1102No
30LYNX1Ly6/neurotoxin 1 [Source:HGNC Symbol;Acc:HGNC:29604]116840.000-0.1318No
31SLC24A1solute carrier family 24 member 1 [Source:HGNC Symbol;Acc:HGNC:10975]119520.000-0.1390No
32IL36RNinterleukin 36 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:15561]126740.000-0.1585No
33DDIT4LDNA damage inducible transcript 4 like [Source:HGNC Symbol;Acc:HGNC:30555]135550.000-0.1823No
34MANSC1MANSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25505]140390.000-0.1954No
35PCDH10protocadherin 10 [Source:HGNC Symbol;Acc:HGNC:13404]147520.000-0.2146No
36NOXO1NADPH oxidase organizer 1 [Source:HGNC Symbol;Acc:HGNC:19404]155250.000-0.2355No
37DCTdopachrome tautomerase [Source:HGNC Symbol;Acc:HGNC:2709]161000.000-0.2510No
38PALMDpalmdelphin [Source:HGNC Symbol;Acc:HGNC:15846]167530.000-0.2687No
39SPOCK1SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:11251]171210.000-0.2786No
40SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]197750.000-0.3504No
41TMEM54transmembrane protein 54 [Source:HGNC Symbol;Acc:HGNC:24143]202640.000-0.3635No
42TYRP1tyrosinase related protein 1 [Source:HGNC Symbol;Acc:HGNC:12450]219930.000-0.4103No
43SFRP1secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]238080.000-0.4593No
44SNAP25synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]243640.000-0.4744No
45ALPK3alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:17574]252570.000-0.4985No
46DUOXA1dual oxidase maturation factor 1 [Source:HGNC Symbol;Acc:HGNC:26507]261850.000-0.5236No
47UCK1uridine-cytidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:14859]28103-0.047-0.5751No
48MRPL49mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:HGNC:1176]28676-0.129-0.5896No
49GAB3GRB2 associated binding protein 3 [Source:HGNC Symbol;Acc:HGNC:17515]28835-0.148-0.5929No
50DNASE1L1deoxyribonuclease 1 like 1 [Source:HGNC Symbol;Acc:HGNC:2957]29704-0.274-0.6144No
51NUDT5nudix hydrolase 5 [Source:HGNC Symbol;Acc:HGNC:8052]29859-0.297-0.6165No
52SLBPstem-loop binding protein [Source:HGNC Symbol;Acc:HGNC:10904]30070-0.326-0.6199No
53AHCYadenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]30166-0.336-0.6201No
54MAPK13mitogen-activated protein kinase 13 [Source:HGNC Symbol;Acc:HGNC:6875]30532-0.389-0.6272No
55CRIP2cysteine rich protein 2 [Source:HGNC Symbol;Acc:HGNC:2361]30551-0.393-0.6250No
56DNA2DNA replication helicase/nuclease 2 [Source:HGNC Symbol;Acc:HGNC:2939]31457-0.537-0.6457No
57BAZ1Bbromodomain adjacent to zinc finger domain 1B [Source:HGNC Symbol;Acc:HGNC:961]31659-0.571-0.6471No
58ZW10zw10 kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13194]31845-0.605-0.6478No
59PLEKHA6pleckstrin homology domain containing A6 [Source:HGNC Symbol;Acc:HGNC:17053]32052-0.651-0.6488No
60EI24EI24 autophagy associated transmembrane protein [Source:HGNC Symbol;Acc:HGNC:13276]32101-0.663-0.6455No
61NANSN-acetylneuraminate synthase [Source:HGNC Symbol;Acc:HGNC:19237]32263-0.696-0.6449No
62TIPINTIMELESS interacting protein [Source:HGNC Symbol;Acc:HGNC:30750]32406-0.721-0.6437No
63AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]32892-0.845-0.6509Yes
64ACOX3acyl-CoA oxidase 3, pristanoyl [Source:HGNC Symbol;Acc:HGNC:121]32931-0.855-0.6459Yes
65CTDSP1CTD small phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:21614]33086-0.893-0.6438Yes
66PDXPpyridoxal phosphatase [Source:HGNC Symbol;Acc:HGNC:30259]33152-0.914-0.6391Yes
67PCBP2poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8648]33290-0.955-0.6361Yes
68LCMT1leucine carboxyl methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:17557]33293-0.956-0.6294Yes
69HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]33618-1.054-0.6308Yes
70TKFCtriokinase and FMN cyclase [Source:HGNC Symbol;Acc:HGNC:24552]33624-1.055-0.6235Yes
71RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33690-1.077-0.6177Yes
72PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]33721-1.084-0.6109Yes
73IFT27intraflagellar transport 27 [Source:HGNC Symbol;Acc:HGNC:18626]33868-1.135-0.6069Yes
74MRPL45mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651]33960-1.171-0.6011Yes
75SULF2sulfatase 2 [Source:HGNC Symbol;Acc:HGNC:20392]34067-1.204-0.5955Yes
76TIMELESStimeless circadian regulator [Source:HGNC Symbol;Acc:HGNC:11813]34130-1.218-0.5886Yes
77TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]34234-1.257-0.5826Yes
78MMGT1membrane magnesium transporter 1 [Source:HGNC Symbol;Acc:HGNC:28100]34395-1.316-0.5776Yes
79GNB1LG protein subunit beta 1 like [Source:HGNC Symbol;Acc:HGNC:4397]34804-1.463-0.5784Yes
80MRE11MRE11 homolog, double strand break repair nuclease [Source:HGNC Symbol;Acc:HGNC:7230]34816-1.469-0.5684Yes
81STUB1STIP1 homology and U-box containing protein 1 [Source:HGNC Symbol;Acc:HGNC:11427]34886-1.504-0.5596Yes
82PEX11Bperoxisomal biogenesis factor 11 beta [Source:HGNC Symbol;Acc:HGNC:8853]34998-1.564-0.5517Yes
83VPS16VPS16 core subunit of CORVET and HOPS complexes [Source:HGNC Symbol;Acc:HGNC:14584]35110-1.632-0.5432Yes
84SIVA1SIVA1 apoptosis inducing factor [Source:HGNC Symbol;Acc:HGNC:17712]35227-1.689-0.5345Yes
85PLXNB2plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]35277-1.718-0.5237Yes
86DCXRdicarbonyl and L-xylulose reductase [Source:HGNC Symbol;Acc:HGNC:18985]35307-1.734-0.5123Yes
87PMS2PMS1 homolog 2, mismatch repair system component [Source:HGNC Symbol;Acc:HGNC:9122]35327-1.743-0.5006Yes
88ZFP30ZFP30 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29555]35380-1.765-0.4896Yes
89PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35508-1.842-0.4801Yes
90SLC2A9solute carrier family 2 member 9 [Source:HGNC Symbol;Acc:HGNC:13446]35546-1.865-0.4679Yes
91PPM1Mprotein phosphatase, Mg2+/Mn2+ dependent 1M [Source:HGNC Symbol;Acc:HGNC:26506]35581-1.889-0.4556Yes
92ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35626-1.922-0.4433Yes
93EPHX1epoxide hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3401]35734-2.006-0.4321Yes
94UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]35736-2.006-0.4180Yes
95RAD51CRAD51 paralog C [Source:HGNC Symbol;Acc:HGNC:9820]35799-2.059-0.4052Yes
96POLE2DNA polymerase epsilon 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9178]35868-2.107-0.3922Yes
97RAD54LRAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]35882-2.115-0.3777Yes
98MCM6minichromosome maintenance complex component 6 [Source:HGNC Symbol;Acc:HGNC:6949]36012-2.211-0.3656Yes
99TPRA1transmembrane protein adipocyte associated 1 [Source:HGNC Symbol;Acc:HGNC:30413]36108-2.286-0.3522Yes
100NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36138-2.314-0.3367Yes
101STMN1stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]36191-2.357-0.3215Yes
102SLC35B2solute carrier family 35 member B2 [Source:HGNC Symbol;Acc:HGNC:16872]36196-2.360-0.3050Yes
103RPA1replication protein A1 [Source:HGNC Symbol;Acc:HGNC:10289]36284-2.451-0.2901Yes
104THRAthyroid hormone receptor alpha [Source:HGNC Symbol;Acc:HGNC:11796]36497-2.709-0.2768Yes
105MSH6mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]36544-2.786-0.2585Yes
106MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]36546-2.789-0.2389Yes
107BBC3BCL2 binding component 3 [Source:HGNC Symbol;Acc:HGNC:17868]36586-2.867-0.2198Yes
108GANCglucosidase alpha, neutral C [Source:HGNC Symbol;Acc:HGNC:4139]36663-2.967-0.2010Yes
109RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36679-3.000-0.1803Yes
110SPICE1spindle and centriole associated protein 1 [Source:HGNC Symbol;Acc:HGNC:25083]36701-3.055-0.1594Yes
111CLN6CLN6 transmembrane ER protein [Source:HGNC Symbol;Acc:HGNC:2077]36736-3.113-0.1385Yes
112DNMT1DNA methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2976]36757-3.180-0.1167Yes
113CCNE1cyclin E1 [Source:HGNC Symbol;Acc:HGNC:1589]36789-3.243-0.0947Yes
114NUMBLNUMB like endocytic adaptor protein [Source:HGNC Symbol;Acc:HGNC:8061]36881-3.501-0.0726Yes
115CCNE2cyclin E2 [Source:HGNC Symbol;Acc:HGNC:1590]36884-3.527-0.0478Yes
116PMM1phosphomannomutase 1 [Source:HGNC Symbol;Acc:HGNC:9114]36951-3.783-0.0230Yes
117SLC2A8solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]36959-3.8030.0035Yes
Table: GSEA details [plain text format]



Fig 2: RB_DN.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: RB_DN.V1_UP: Random ES distribution   
Gene set null distribution of ES for RB_DN.V1_UP