Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.4008052
Normalized Enrichment Score (NES)1.0843644
Nominal p-value0.19444445
FDR q-value0.27930033
FWER p-Value0.705
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]04.9890.0280Yes
2IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]84.8500.0550Yes
3TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]414.2390.0779Yes
4GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]564.0260.1001Yes
5BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]584.0070.1226Yes
6IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]1023.4370.1407Yes
7SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1133.3720.1593Yes
8GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1812.9960.1743Yes
9CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]1922.9330.1905Yes
10SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2232.8340.2056Yes
11CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2632.6850.2196Yes
12PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]3272.4560.2316Yes
13CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]3482.3770.2444Yes
14IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]3492.3750.2577Yes
15CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]4372.1820.2676Yes
16BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]4772.1190.2785Yes
17SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]4972.0840.2896Yes
18EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]5931.9320.2979Yes
19ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]6031.9150.3084Yes
20SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]6391.8590.3179Yes
21ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]6411.8570.3283Yes
22TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]7171.7680.3361Yes
23ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]7641.7120.3445Yes
24GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]8401.6190.3515Yes
25ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]8711.5870.3596Yes
26DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]9161.5430.3671Yes
27MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]9961.4740.3732Yes
28PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]10401.4420.3802Yes
29CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]10861.4030.3868Yes
30SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]11061.3920.3941Yes
31TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]12501.3010.3975Yes
32PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]16651.0790.3924Yes
33CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]17561.0340.3957Yes
34TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]18091.0130.4000Yes
35DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]21080.8920.3969Yes
36GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]23800.7960.3941Yes
37ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]23950.7930.3981Yes
38TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]24580.7780.4008Yes
39HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]27890.6840.3957No
40JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]31440.5960.3895No
41BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]31520.5950.3926No
42CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]33460.5520.3905No
43GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]34350.5270.3911No
44CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]34500.5250.3936No
45IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]35630.5000.3934No
46ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]36780.4760.3930No
47CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]37220.4670.3944No
48CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]37590.4600.3960No
49XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]37760.4570.3982No
50FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]41450.3930.3904No
51DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]43450.3530.3870No
52BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]44310.3390.3866No
53TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]46710.3010.3818No
54DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]48140.2750.3795No
55BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]50080.2420.3756No
56PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]52050.2070.3715No
57MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]59240.1020.3526No
58GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]60560.0860.3496No
59IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]62500.0510.3446No
60BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]65410.0040.3368No
61BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]75820.0000.3086No
62CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]77820.0000.3032No
63PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]78710.0000.3009No
64FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]93650.0000.2604No
65GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]96640.0000.2524No
66PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]100920.0000.2408No
67HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]109660.0000.2172No
68LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]114640.0000.2037No
69PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]116470.0000.1988No
70EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]116550.0000.1986No
71IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]119360.0000.1910No
72ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]121570.0000.1850No
73TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]125780.0000.1737No
74IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]139330.0000.1370No
75BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]156390.0000.0908No
76CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]158290.0000.0857No
77DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]160960.0000.0785No
78F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]162150.0000.0753No
79F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]165480.0000.0663No
80AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]166880.0000.0626No
81TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171960.0000.0488No
82HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]174110.0000.0430No
83DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]181580.0000.0228No
84LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]187940.0000.0056No
85AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]199580.000-0.0258No
86FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]202910.000-0.0348No
87IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]205320.000-0.0413No
88SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]216740.000-0.0722No
89KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]221110.000-0.0840No
90CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]224690.000-0.0937No
91CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]231600.000-0.1124No
92CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]232380.000-0.1145No
93IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]249360.000-0.1604No
94PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]259250.000-0.1872No
95CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]270630.000-0.2180No
96TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]277660.000-0.2370No
97MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]27887-0.016-0.2401No
98NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]28319-0.079-0.2514No
99VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28530-0.107-0.2565No
100PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]28565-0.112-0.2567No
101EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]28608-0.119-0.2572No
102DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]28969-0.166-0.2660No
103RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]29004-0.172-0.2660No
104SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29328-0.220-0.2735No
105BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]29494-0.241-0.2766No
106PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]29514-0.243-0.2758No
107NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]29527-0.245-0.2747No
108PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]29599-0.258-0.2752No
109RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]29629-0.263-0.2745No
110IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]29766-0.285-0.2766No
111LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]30205-0.341-0.2865No
112APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]30254-0.347-0.2859No
113BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]30294-0.354-0.2850No
114BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]31120-0.480-0.3046No
115RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]31353-0.519-0.3080No
116DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]31577-0.558-0.3109No
117BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]31638-0.567-0.3093No
118CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]31655-0.570-0.3066No
119CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]32180-0.677-0.3170No
120SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]32420-0.726-0.3194No
121PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]32705-0.797-0.3226No
122PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]32760-0.814-0.3195No
123BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]32770-0.817-0.3151No
124CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]32963-0.865-0.3155No
125RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]33050-0.885-0.3128No
126HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]33267-0.949-0.3134No
127CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]33278-0.952-0.3083No
128DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]33346-0.971-0.3047No
129ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]33500-1.018-0.3031No
130SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]34161-1.231-0.3141No
131PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]34438-1.330-0.3141No
132TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]34442-1.332-0.3067No
133ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]34550-1.368-0.3019No
134MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]34587-1.386-0.2951No
135CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34652-1.411-0.2889No
136DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]34818-1.470-0.2852No
137CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]34928-1.528-0.2795No
138LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]34949-1.543-0.2714No
139RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35100-1.626-0.2664No
140CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]35113-1.633-0.2575No
141CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35270-1.715-0.2521No
142FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]35289-1.725-0.2430No
143CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]35377-1.763-0.2354No
144EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35569-1.879-0.2301No
145CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35764-2.028-0.2239No
146TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35959-2.181-0.2170No
147ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36098-2.276-0.2079No
148RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]36189-2.355-0.1972No
149GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]36243-2.406-0.1851No
150TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36328-2.503-0.1733No
151CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36454-2.651-0.1618No
152WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36455-2.653-0.1470No
153GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]36474-2.687-0.1324No
154BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36479-2.689-0.1174No
155GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36609-2.892-0.1047No
156GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36733-3.106-0.0906No
157H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36801-3.280-0.0740No
158BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36830-3.352-0.0560No
159BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]36924-3.662-0.0380No
160BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36929-3.683-0.0174No
161PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]36983-3.8770.0029No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS