Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.4611761
Normalized Enrichment Score (NES)-1.0092498
Nominal p-value0.45679012
FDR q-value0.6998329
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]813.6600.0241No
2COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]2862.6080.0373No
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]3772.3040.0514No
4HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]4822.1110.0638No
5POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]5601.9790.0759No
6ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]5701.9640.0898No
7NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]5731.9610.1038No
8GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]6921.8070.1136No
9CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]8181.6390.1220No
10APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]9611.5070.1290No
11GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]9631.5060.1398No
12GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]9651.5030.1505No
13ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]10361.4440.1590No
14ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]10781.4110.1680No
15ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]12411.3050.1730No
16POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]13511.2410.1790No
17POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]14151.1960.1859No
18DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]15511.1350.1904No
19TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]15581.1330.1984No
20ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]21910.8660.1875No
21ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]24720.7740.1855No
22TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]25550.7450.1886No
23DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]25890.7360.1930No
24POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]26140.7280.1976No
25SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]27600.6920.1986No
26GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]27800.6870.2030No
27SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]28540.6650.2058No
28TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]29750.6360.2072No
29SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]30090.6280.2108No
30GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]30950.6090.2129No
31SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]31300.6010.2163No
32NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]33020.5610.2157No
33RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]34040.5350.2168No
34POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]36040.4920.2149No
35ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]38520.4440.2114No
36SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]39940.4160.2106No
37TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]40040.4140.2133No
38RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]40590.4060.2148No
39NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]40800.4030.2171No
40ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]41660.3890.2176No
41SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]42820.3650.2171No
42EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]44510.3350.2150No
43POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]45910.3120.2135No
44POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]46210.3090.2149No
45TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]47010.2970.2149No
46EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]47930.2800.2144No
47POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]49850.2470.2110No
48GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]50370.2350.2114No
49TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]51530.2140.2098No
50CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]51650.2120.2110No
51SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]54220.1730.2053No
52BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]55350.1560.2034No
53CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]56230.1430.2021No
54RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]57020.1360.2009No
55VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]57100.1350.2017No
56POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]59300.1010.1965No
57POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]62640.0470.1878No
58RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]62740.0450.1879No
59CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]62910.0430.1878No
60UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]63000.0420.1879No
61CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]63460.0330.1869No
62PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]64020.0260.1856No
63POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]65060.0090.1829No
64BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]158480.000-0.0700No
65BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]179240.000-0.1262No
66CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]231140.000-0.2666No
67NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]238920.000-0.2876No
68ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]264300.000-0.3563No
69SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]27868-0.012-0.3951No
70SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]27881-0.014-0.3954No
71CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]27961-0.029-0.3973No
72DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]28140-0.054-0.4017No
73SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]28242-0.069-0.4040No
74POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]28535-0.107-0.4111No
75NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]28677-0.129-0.4140No
76MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]29158-0.193-0.4256No
77TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]29260-0.211-0.4268No
78NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]29384-0.229-0.4285No
79TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]29460-0.239-0.4288No
80STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]29576-0.253-0.4301No
81GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]29692-0.271-0.4313No
82UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]29868-0.299-0.4339No
83NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]30124-0.332-0.4384No
84MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]30206-0.342-0.4381No
85BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]30294-0.354-0.4379No
86FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]30452-0.375-0.4395No
87RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]30579-0.397-0.4400No
88POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]30587-0.399-0.4374No
89POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]30674-0.413-0.4367No
90ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]30866-0.444-0.4387No
91SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]30899-0.449-0.4363No
92POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]31131-0.482-0.4391No
93AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]31752-0.588-0.4517No
94NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]32074-0.657-0.4557No
95USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]32091-0.660-0.4513No
96NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]32455-0.734-0.4559Yes
97IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]32534-0.752-0.4526Yes
98TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32700-0.796-0.4514Yes
99POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]32720-0.802-0.4461Yes
100POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]32874-0.840-0.4442Yes
101AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]32892-0.845-0.4386Yes
102NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]32910-0.849-0.4330Yes
103ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]32964-0.865-0.4282Yes
104HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]33002-0.873-0.4229Yes
105ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]33064-0.887-0.4182Yes
106ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]33076-0.891-0.4121Yes
107ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]33132-0.907-0.4071Yes
108NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]33335-0.967-0.4056Yes
109DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]33401-0.987-0.4003Yes
110POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]33425-0.996-0.3937Yes
111RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]33457-1.006-0.3873Yes
112RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33690-1.077-0.3859Yes
113PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]33721-1.084-0.3789Yes
114VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]33741-1.090-0.3716Yes
115TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]33802-1.112-0.3652Yes
116VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]33984-1.180-0.3616Yes
117TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]34063-1.203-0.3551Yes
118TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]34112-1.214-0.3477Yes
119MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]34143-1.223-0.3397Yes
120NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]34292-1.278-0.3345Yes
121POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]34476-1.343-0.3298Yes
122DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]34584-1.386-0.3228Yes
123DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]34589-1.387-0.3129Yes
124GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]34644-1.408-0.3043Yes
125POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]34660-1.414-0.2945Yes
126SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]34667-1.417-0.2845Yes
127POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34705-1.428-0.2753Yes
128ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]34709-1.429-0.2651Yes
129XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]34727-1.435-0.2552Yes
130GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]34940-1.536-0.2499Yes
131GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]34965-1.551-0.2394Yes
132RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]34976-1.554-0.2285Yes
133RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]35234-1.694-0.2233Yes
134AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]35279-1.719-0.2122Yes
135RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]35417-1.787-0.2030Yes
136POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]35456-1.812-0.1910Yes
137PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35508-1.842-0.1792Yes
138RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]35534-1.859-0.1665Yes
139ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35626-1.922-0.1552Yes
140RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]36015-2.212-0.1498Yes
141NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36138-2.314-0.1365Yes
142RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36418-2.602-0.1253Yes
143AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]36486-2.700-0.1077Yes
144REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]36493-2.706-0.0885Yes
145DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36524-2.760-0.0694Yes
146POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]36563-2.815-0.0502Yes
147LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36627-2.912-0.0310Yes
148POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36649-2.950-0.0104Yes
149GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36733-3.1060.0097Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR