Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_IL6_JAK_STAT3_SIGNALING
Enrichment Score (ES)0.73880804
Normalized Enrichment Score (NES)1.8358576
Nominal p-value0.0
FDR q-value4.2000003E-4
FWER p-Value0.001
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_IL6_JAK_STAT3_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]04.9890.0594Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]134.7400.1155Yes
3TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]174.6150.1704Yes
4TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]414.2390.2203Yes
5PIK3R5phosphoinositide-3-kinase regulatory subunit 5 [Source:HGNC Symbol;Acc:HGNC:30035]1753.0130.2526Yes
6CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]1922.9330.2871Yes
7STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]2422.7560.3186Yes
8CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2632.6850.3500Yes
9SOCS1suppressor of cytokine signaling 1 [Source:HGNC Symbol;Acc:HGNC:19383]3732.3090.3746Yes
10PIM1Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]3952.2610.4009Yes
11TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]4022.2540.4276Yes
12STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]4062.2520.4543Yes
13CD36CD36 molecule [Source:HGNC Symbol;Acc:HGNC:1663]4312.2030.4799Yes
14STAT1signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362]4542.1490.5049Yes
15MYD88MYD88 innate immune signal transduction adaptor [Source:HGNC Symbol;Acc:HGNC:7562]5132.0580.5279Yes
16HAX1HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:HGNC:16915]5232.0420.5519Yes
17CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]6251.8820.5716Yes
18IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]6681.8330.5923Yes
19PTPN11protein tyrosine phosphatase non-receptor type 11 [Source:HGNC Symbol;Acc:HGNC:9644]9621.5060.6023Yes
20CD9CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]9951.4740.6190Yes
21TNFRSF1ATNF receptor superfamily member 1A [Source:HGNC Symbol;Acc:HGNC:11916]10121.4640.6360Yes
22BAK1BCL2 antagonist/killer 1 [Source:HGNC Symbol;Acc:HGNC:949]10231.4560.6531Yes
23TLR2toll like receptor 2 [Source:HGNC Symbol;Acc:HGNC:11848]10971.3980.6678Yes
24IL2RGinterleukin 2 receptor subunit gamma [Source:HGNC Symbol;Acc:HGNC:6010]13101.2670.6771Yes
25MAP3K8mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]15851.1270.6832Yes
26STAM2signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]17131.0550.6923Yes
27PTPN1protein tyrosine phosphatase non-receptor type 1 [Source:HGNC Symbol;Acc:HGNC:9642]19230.9660.6981Yes
28IL17RAinterleukin 17 receptor A [Source:HGNC Symbol;Acc:HGNC:5985]21070.8930.7038Yes
29CCR1C-C motif chemokine receptor 1 [Source:HGNC Symbol;Acc:HGNC:1602]21320.8860.7137Yes
30ACVR1Bactivin A receptor type 1B [Source:HGNC Symbol;Acc:HGNC:172]23210.8190.7184Yes
31TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]24580.7780.7240Yes
32GRB2growth factor receptor bound protein 2 [Source:HGNC Symbol;Acc:HGNC:4566]26740.7090.7266Yes
33HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]27890.6840.7317Yes
34IL13RA1interleukin 13 receptor subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:5974]31030.6070.7305Yes
35JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]31440.5960.7365Yes
36LTBRlymphotoxin beta receptor [Source:HGNC Symbol;Acc:HGNC:6718]33060.5600.7388Yes
37IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]35630.5000.7378No
38CXCL3C-X-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:4604]39100.4340.7337No
39ITGB3integrin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6156]39980.4150.7363No
40FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]41450.3930.7370No
41IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]43870.3460.7346No
42LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]52500.2010.7137No
43LEPRleptin receptor [Source:HGNC Symbol;Acc:HGNC:6554]58660.1110.6984No
44CBLCbl proto-oncogene [Source:HGNC Symbol;Acc:HGNC:1541]61220.0750.6924No
45CNTFRciliary neurotrophic factor receptor [Source:HGNC Symbol;Acc:HGNC:2170]89880.0000.6150No
46TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]94510.0000.6025No
47CRLF2cytokine receptor like factor 2 [Source:HGNC Symbol;Acc:HGNC:14281]110710.0000.5587No
48PLA2G2Aphospholipase A2 group IIA [Source:HGNC Symbol;Acc:HGNC:9031]118050.0000.5389No
49CSF2RAcolony stimulating factor 2 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2435]120940.0000.5311No
50PDGFCplatelet derived growth factor C [Source:HGNC Symbol;Acc:HGNC:8801]136820.0000.4883No
51IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]139980.0000.4797No
52IL9Rinterleukin 9 receptor [Source:HGNC Symbol;Acc:HGNC:6030]140670.0000.4779No
53IL15RAinterleukin 15 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:5978]143000.0000.4716No
54EBI3Epstein-Barr virus induced 3 [Source:HGNC Symbol;Acc:HGNC:3129]151560.0000.4485No
55IL17RBinterleukin 17 receptor B [Source:HGNC Symbol;Acc:HGNC:18015]152070.0000.4472No
56IL18R1interleukin 18 receptor 1 [Source:HGNC Symbol;Acc:HGNC:5988]155510.0000.4379No
57IL2RAinterleukin 2 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:6008]157020.0000.4339No
58IL1R1interleukin 1 receptor type 1 [Source:HGNC Symbol;Acc:HGNC:5993]159700.0000.4266No
59IL1R2interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]159710.0000.4266No
60IL3RAinterleukin 3 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:6012]165820.0000.4102No
61IFNAR1interferon alpha and beta receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:5432]185050.0000.3582No
62CXCL13C-X-C motif chemokine ligand 13 [Source:HGNC Symbol;Acc:HGNC:10639]189080.0000.3474No
63CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189460.0000.3464No
64OSMRoncostatin M receptor [Source:HGNC Symbol;Acc:HGNC:8507]190260.0000.3442No
65CXCL9C-X-C motif chemokine ligand 9 [Source:HGNC Symbol;Acc:HGNC:7098]194680.0000.3323No
66CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]194800.0000.3320No
67IL12RB1interleukin 12 receptor subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:5971]196430.0000.3276No
68PF4platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861]200140.0000.3176No
69IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]205320.0000.3037No
70IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]205340.0000.3036No
71CCL7C-C motif chemokine ligand 7 [Source:HGNC Symbol;Acc:HGNC:10634]230640.0000.2353No
72CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]231600.0000.2327No
73CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]247240.0000.1905No
74REG1Aregenerating family member 1 alpha [Source:HGNC Symbol;Acc:HGNC:9951]266590.0000.1382No
75A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]272660.0000.1218No
76PTPN2protein tyrosine phosphatase non-receptor type 2 [Source:HGNC Symbol;Acc:HGNC:9650]27932-0.0250.1042No
77CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]28392-0.0880.0928No
78ACVRL1activin A receptor like type 1 [Source:HGNC Symbol;Acc:HGNC:175]28745-0.1370.0849No
79DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]29469-0.2400.0683No
80IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]29766-0.2850.0636No
81IL10RBinterleukin 10 receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:5965]32260-0.6950.0046No
82TYK2tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:12440]32274-0.6980.0125No
83INHBEinhibin subunit beta E [Source:HGNC Symbol;Acc:HGNC:24029]32435-0.7280.0169No
84CSF2RBcolony stimulating factor 2 receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:2436]32767-0.8160.0176No
85CSF3Rcolony stimulating factor 3 receptor [Source:HGNC Symbol;Acc:HGNC:2439]35573-1.883-0.0357No
86IL6STinterleukin 6 signal transducer [Source:HGNC Symbol;Acc:HGNC:6021]36212-2.376-0.0247No
87ITGA4integrin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6140]37018-4.0630.0019No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_IL6_JAK_STAT3_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_IL6_JAK_STAT3_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_IL6_JAK_STAT3_SIGNALING