Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_MYC_TARGETS_V2
Enrichment Score (ES)0.57078516
Normalized Enrichment Score (NES)1.3235078
Nominal p-value0.04411765
FDR q-value0.06529663
FWER p-Value0.147
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_MYC_TARGETS_V2   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]164.6220.0595Yes
2MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]184.5780.1189Yes
3GRWD1glutamate rich WD repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:21270]3552.3710.1406Yes
4RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]3652.3450.1708Yes
5RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]4182.2310.1983Yes
6MYBBP1AMYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]4882.1030.2237Yes
7NIP7nucleolar pre-rRNA processing protein NIP7 [Source:HGNC Symbol;Acc:HGNC:24328]5332.0240.2488Yes
8NOP2NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]5851.9400.2726Yes
9UTP20UTP20 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]7961.6680.2886Yes
10NOP16NOP16 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:26934]9171.5430.3054Yes
11IPO4importin 4 [Source:HGNC Symbol;Acc:HGNC:19426]9591.5080.3238Yes
12WDR43WD repeat domain 43 [Source:HGNC Symbol;Acc:HGNC:28945]10461.4380.3402Yes
13BYSLbystin like [Source:HGNC Symbol;Acc:HGNC:1157]10581.4320.3584Yes
14TCOF1treacle ribosome biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:11654]12241.3150.3710Yes
15PPRC1PPARG related coactivator 1 [Source:HGNC Symbol;Acc:HGNC:30025]12281.3110.3880Yes
16PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]14351.1870.3978Yes
17DDX18DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]15181.1470.4105Yes
18MRTO4MRT4 homolog, ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:18477]15561.1330.4242Yes
19IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]15801.1270.4382Yes
20HK2hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]17371.0450.4475Yes
21PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]17611.0320.4603Yes
22PUS1pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]17661.0290.4735Yes
23FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]17901.0200.4861Yes
24NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]18061.0130.4989Yes
25GNL3G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]18321.0050.5113Yes
26RCL1RNA terminal phosphate cyclase like 1 [Source:HGNC Symbol;Acc:HGNC:17687]18940.9820.5223Yes
27SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]21130.8910.5280Yes
28NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]22850.8320.5342Yes
29NOC4Lnucleolar complex associated 4 homolog [Source:HGNC Symbol;Acc:HGNC:28461]23180.8210.5440Yes
30HSPD1heat shock protein family D (Hsp60) member 1 [Source:HGNC Symbol;Acc:HGNC:5261]23250.8180.5544Yes
31WDR74WD repeat domain 74 [Source:HGNC Symbol;Acc:HGNC:25529]27040.7040.5534Yes
32SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]28200.6780.5591Yes
33PES1pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]29630.6390.5635Yes
34MPHOSPH10M-phase phosphoprotein 10 [Source:HGNC Symbol;Acc:HGNC:7213]30350.6230.5697Yes
35AIMP2aminoacyl tRNA synthetase complex interacting multifunctional protein 2 [Source:HGNC Symbol;Acc:HGNC:20609]33530.5510.5683Yes
36LAS1LLAS1 like ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:25726]35150.5090.5705Yes
37NDUFAF4NADH:ubiquinone oxidoreductase complex assembly factor 4 [Source:HGNC Symbol;Acc:HGNC:21034]37300.4660.5708Yes
38DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]44120.3410.5568No
39HSPE1heat shock protein family E (Hsp10) member 1 [Source:HGNC Symbol;Acc:HGNC:5269]44500.3350.5602No
40NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]51030.2220.5455No
41TBRG4transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]61400.0720.5184No
42PPANpeter pan homolog [Source:HGNC Symbol;Acc:HGNC:9227]28743-0.137-0.0901No
43RABEPKRab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]29089-0.184-0.0971No
44PRMT3protein arginine methyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30163]29830-0.293-0.1132No
45SUPV3L1Suv3 like RNA helicase [Source:HGNC Symbol;Acc:HGNC:11471]29831-0.293-0.1094No
46TFB2Mtranscription factor B2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:18559]30096-0.329-0.1123No
47TMEM97transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]30781-0.429-0.1252No
48PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]33697-1.078-0.1899No
49SLC29A2solute carrier family 29 member 2 [Source:HGNC Symbol;Acc:HGNC:11004]33833-1.124-0.1790No
50CDK4cyclin dependent kinase 4 [Source:HGNC Symbol;Acc:HGNC:1773]34451-1.336-0.1783No
51MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34655-1.411-0.1655No
52PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]34860-1.492-0.1516No
53EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]35582-1.889-0.1466No
54MCM5minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]35755-2.023-0.1250No
55CBX3chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]36350-2.527-0.1082No
56MAP3K6mitogen-activated protein kinase kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6858]36427-2.617-0.0763No
57SORDsorbitol dehydrogenase [Source:HGNC Symbol;Acc:HGNC:11184]36581-2.858-0.0434No
58UNGuracil DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572]37063-4.3990.0007No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_MYC_TARGETS_V2   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_MYC_TARGETS_V2: Random ES distribution   
Gene set null distribution of ES for HALLMARK_MYC_TARGETS_V2