Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.5525118
Normalized Enrichment Score (NES)1.2590739
Nominal p-value0.06603774
FDR q-value0.10337058
FWER p-Value0.242
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]274.4390.0691Yes
2FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]354.3350.1372Yes
3ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]753.7370.1950Yes
4SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]1133.3720.2470Yes
5JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1163.3630.2999Yes
6SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]1653.1020.3474Yes
7PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]2762.6490.3862Yes
8ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]3352.4200.4227Yes
9TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]4022.2540.4564Yes
10SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]4922.0960.4870Yes
11SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]4972.0840.5197Yes
12RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]9891.4800.5297Yes
13UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]12921.2780.5417Yes
14TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]21120.8910.5336Yes
15BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]22430.8470.5434Yes
16HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]26850.7070.5426Yes
17SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]34030.5350.5317Yes
18CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]34500.5250.5387Yes
19THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]35130.5100.5451Yes
20WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]37410.4630.5462Yes
21XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]37760.4570.5525Yes
22PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]43220.3570.5434No
23SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]44430.3360.5455No
24BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]51700.2110.5292No
25CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]51970.2090.5318No
26FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]55010.1620.5262No
27NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]56890.1390.5233No
28ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]65520.0010.5000No
29CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]96330.0000.4169No
30CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]127570.0000.3326No
31TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]135870.0000.3102No
32NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]193650.0000.1542No
33LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]202590.0000.1301No
34IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]205340.0000.1227No
35ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]28251-0.070-0.0845No
36APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]28634-0.122-0.0929No
37MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]29055-0.180-0.1014No
38PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]29686-0.270-0.1142No
39BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]30077-0.327-0.1196No
40FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]30307-0.356-0.1202No
41ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]30882-0.447-0.1286No
42SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]31118-0.480-0.1274No
43PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]31301-0.510-0.1243No
44SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]31392-0.526-0.1185No
45TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]32047-0.651-0.1259No
46LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]32410-0.723-0.1243No
47HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]32592-0.772-0.1170No
48RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]32644-0.782-0.1061No
49SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]34272-1.271-0.1300No
50SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]35000-1.564-0.1250No
51TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]36034-2.231-0.1178No
52BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36479-2.689-0.0875No
53SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36690-3.034-0.0454No
54KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36897-3.5660.0052No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING