Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_UNFOLDED_PROTEIN_RESPONSE
Enrichment Score (ES)0.48260027
Normalized Enrichment Score (NES)1.2366601
Nominal p-value0.06716418
FDR q-value0.10531451
FWER p-Value0.286
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DNAJB9DnaJ heat shock protein family (Hsp40) member B9 [Source:HGNC Symbol;Acc:HGNC:6968]3902.2690.0147Yes
2RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]4182.2310.0388Yes
3SDAD1SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]4302.2040.0630Yes
4HERPUD1homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]5282.0370.0831Yes
5HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]5511.9900.1046Yes
6SRPRASRP receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:11307]6871.8150.1211Yes
7ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]7641.7120.1381Yes
8FUSFUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]7761.6970.1567Yes
9ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]9251.5370.1698Yes
10CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]9921.4770.1845Yes
11DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]11311.3740.1960Yes
12TATDN2TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]11531.3610.2106Yes
13LSM1LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]12191.3180.2235Yes
14NABP1nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]12751.2860.2363Yes
15YWHAZtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]13261.2580.2490Yes
16ATF4activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]13671.2290.2615Yes
17IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]13961.2080.2742Yes
18EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]14731.1640.2851Yes
19NOP14NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]15661.1300.2952Yes
20CEBPBCCAAT enhancer binding protein beta [Source:HGNC Symbol;Acc:HGNC:1834]15751.1300.3076Yes
21EXOSC1exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]18031.0140.3127Yes
22NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]18061.0130.3239Yes
23BAG3BAG cochaperone 3 [Source:HGNC Symbol;Acc:HGNC:939]18520.9970.3338Yes
24DCP1Adecapping mRNA 1A [Source:HGNC Symbol;Acc:HGNC:18714]18780.9880.3441Yes
25SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]19140.9700.3540Yes
26DCP2decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]19150.9700.3648Yes
27TSPYL2TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]19780.9480.3736Yes
28CNOT4CCR4-NOT transcription complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:7880]20010.9350.3834Yes
29HYOU1hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931]21420.8820.3895Yes
30SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]21510.8800.3990Yes
31CALRcalreticulin [Source:HGNC Symbol;Acc:HGNC:1455]22500.8440.4058Yes
32NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]22850.8320.4141Yes
33SRPRBSRP receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:24085]22910.8290.4232Yes
34KIF5Bkinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]22980.8280.4323Yes
35EXOSC4exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189]24930.7670.4355Yes
36TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]25260.7540.4431Yes
37SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]25850.7370.4497Yes
38TTC37tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]27820.6860.4520Yes
39LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]29520.6420.4546Yes
40SEC11ASEC11 homolog A, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:17718]32000.5840.4544Yes
41ARFGAP1ADP ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]32540.5690.4593Yes
42BANF1BAF nuclear assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]34520.5240.4598Yes
43EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]36370.4860.4603Yes
44EIF4G1eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]37480.4620.4624Yes
45IARS1isoleucyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:5330]37830.4560.4666Yes
46EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]39320.4290.4673Yes
47CCL2C-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]41220.3950.4666Yes
48SPCS1signal peptidase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23401]42780.3660.4665Yes
49YIF1AYip1 interacting factor homolog A, membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:16688]43690.3490.4680Yes
50MTHFD2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434]44390.3370.4698Yes
51EIF4EBP1eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]45110.3250.4715Yes
52GEMIN4gem nuclear organelle associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]46530.3040.4711Yes
53DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]46850.2990.4736Yes
54CXXC1CXXC finger protein 1 [Source:HGNC Symbol;Acc:HGNC:24343]47330.2910.4756Yes
55SSR1signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323]47340.2910.4788Yes
56DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]48140.2750.4797Yes
57PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]48900.2600.4806Yes
58PAIP1poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16945]50060.2420.4802Yes
59EXOSC2exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]50890.2270.4805Yes
60NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]51030.2220.4826Yes
61EXOSC10exosome component 10 [Source:HGNC Symbol;Acc:HGNC:9138]52470.2010.4810No
62CNOT6CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]54830.1650.4764No
63SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]54880.1640.4782No
64NFYAnuclear transcription factor Y subunit alpha [Source:HGNC Symbol;Acc:HGNC:7804]55780.1490.4774No
65DDX10DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735]56260.1430.4777No
66XPOTexportin for tRNA [Source:HGNC Symbol;Acc:HGNC:12826]56920.1380.4775No
67EIF4A2eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]58220.1200.4754No
68HSPA9heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]58410.1160.4762No
69CNOT2CCR4-NOT transcription complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:7878]58650.1110.4768No
70EDC4enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]59140.1050.4766No
71EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]59440.0990.4770No
72POP4POP4 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30081]61750.0660.4715No
73XBP1X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]63380.0340.4675No
74DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]64460.0230.4648No
75MTREXMtr4 exosome RNA helicase [Source:HGNC Symbol;Acc:HGNC:18734]64990.0110.4635No
76IGFBP1insulin like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]119210.0000.3169No
77WFS1wolframin ER transmembrane glycoprotein [Source:HGNC Symbol;Acc:HGNC:12762]28064-0.041-0.1191No
78ZBTB17zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:HGNC:12936]28073-0.043-0.1189No
79GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]28282-0.075-0.1237No
80SEC31ASEC31 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:17052]28550-0.110-0.1297No
81PDIA5protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]28660-0.126-0.1312No
82PDIA6protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]28803-0.144-0.1334No
83SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]28843-0.148-0.1328No
84NHP2NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377]28864-0.152-0.1317No
85EXOC2exocyst complex component 2 [Source:HGNC Symbol;Acc:HGNC:24968]29032-0.177-0.1342No
86HSP90B1heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]29143-0.190-0.1351No
87RPS14ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]30400-0.369-0.1650No
88VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]30658-0.411-0.1673No
89ATF6activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]30854-0.441-0.1677No
90NFYBnuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805]30915-0.451-0.1643No
91STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]31438-0.533-0.1725No
92CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]31632-0.566-0.1714No
93DCTN1dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]31724-0.583-0.1674No
94EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]31747-0.587-0.1615No
95PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]32025-0.646-0.1618No
96EEF2eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]32066-0.655-0.1556No
97ALDH18A1aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722]32069-0.655-0.1483No
98ATP6V0D1ATPase H+ transporting V0 subunit d1 [Source:HGNC Symbol;Acc:HGNC:13724]32288-0.702-0.1464No
99IMP3IMP U3 small nucleolar ribonucleoprotein 3 [Source:HGNC Symbol;Acc:HGNC:14497]32645-0.783-0.1473No
100KDELR3KDEL endoplasmic reticulum protein retention receptor 3 [Source:HGNC Symbol;Acc:HGNC:6306]32679-0.790-0.1394No
101SLC30A5solute carrier family 30 member 5 [Source:HGNC Symbol;Acc:HGNC:19089]32694-0.794-0.1310No
102CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]32783-0.819-0.1242No
103TUBB2Atubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]32801-0.823-0.1155No
104KHSRPKH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]33348-0.971-0.1195No
105PARNpoly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]34173-1.235-0.1280No
106EIF2AK3eukaryotic translation initiation factor 2 alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:3255]34887-1.505-0.1306No
107ERN1endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]35317-1.738-0.1228No
108EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]35582-1.889-0.1089No
109EDEM1ER degradation enhancing alpha-mannosidase like protein 1 [Source:HGNC Symbol;Acc:HGNC:18967]35729-2.002-0.0906No
110ERO1Aendoplasmic reticulum oxidoreductase 1 alpha [Source:HGNC Symbol;Acc:HGNC:13280]35737-2.007-0.0685No
111FKBP14FKBP prolyl isomerase 14 [Source:HGNC Symbol;Acc:HGNC:18625]36414-2.600-0.0578No
112H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36470-2.674-0.0296No
113WIPI1WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]37031-4.1620.0016No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UNFOLDED_PROTEIN_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UNFOLDED_PROTEIN_RESPONSE