Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetCHR2Q11
Enrichment Score (ES)0.4704083
Normalized Enrichment Score (NES)1.2373173
Nominal p-value0.028169014
FDR q-value0.38533127
FWER p-Value0.92
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR2Q11   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]304.7380.0928Yes
2SEMA4Csemaphorin 4C [Source:HGNC Symbol;Acc:HGNC:10731]1643.6480.1613Yes
3MITD1microtubule interacting and trafficking domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25207]2543.1640.2214Yes
4ARID5AAT-rich interaction domain 5A [Source:HGNC Symbol;Acc:HGNC:17361]3792.6700.2708Yes
5TMEM127transmembrane protein 127 [Source:HGNC Symbol;Acc:HGNC:26038]8851.7080.2909Yes
6ITPRIPL1ITPRIP like 1 [Source:HGNC Symbol;Acc:HGNC:29371]10411.5300.3170Yes
7RNF149ring finger protein 149 [Source:HGNC Symbol;Acc:HGNC:23137]11041.4650.3442Yes
8TXNDC9thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24110]11951.3970.3694Yes
9PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]16601.1110.3788Yes
10EIF5Beukaryotic translation initiation factor 5B [Source:HGNC Symbol;Acc:HGNC:30793]16841.1000.3999Yes
11CIAO1cytosolic iron-sulfur assembly component 1 [Source:HGNC Symbol;Acc:HGNC:14280]20550.9190.4080Yes
12ZNF2zinc finger protein 2 [Source:HGNC Symbol;Acc:HGNC:12991]21740.8670.4220Yes
13MGAT4Aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [Source:HGNC Symbol;Acc:HGNC:7047]23270.8030.4337Yes
14COA5cytochrome c oxidase assembly factor 5 [Source:HGNC Symbol;Acc:HGNC:33848]31810.5580.4217Yes
15CRACDLCRACD like [Source:HGNC Symbol;Acc:HGNC:33454]32330.5430.4310Yes
16TMEM131transmembrane protein 131 [Source:HGNC Symbol;Acc:HGNC:30366]32710.5340.4406Yes
17SNX18P14sorting nexin 18 pseudogene 14 [Source:HGNC Symbol;Acc:HGNC:39622]35570.4680.4421Yes
18BBIP1P1BBSome interacting protein 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:52781]38460.4110.4425Yes
19ANKRD23ankyrin repeat domain 23 [Source:HGNC Symbol;Acc:HGNC:24470]41240.3550.4420Yes
20ASTLastacin like metalloendopeptidase [Source:HGNC Symbol;Acc:HGNC:31704]41600.3500.4479Yes
21CNOT11CCR4-NOT transcription complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:25217]41970.3400.4537Yes
22ATP5F1BP1ATP synthase F1 subunit beta pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:831]42060.3380.4601Yes
23YWHAQP5YWHAQ pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:37684]42160.3360.4665Yes
24UNC50unc-50 inner nuclear membrane RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16046]43050.3170.4704Yes
25SNORD89small nucleolar RNA, C/D box 89 [Source:HGNC Symbol;Acc:HGNC:32750]46710.2410.4653No
26KANSL3KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]54930.0940.4449No
27HMGN2P22high mobility group nucleosomal binding domain 2 pseudogene 22 [Source:HGNC Symbol;Acc:HGNC:39387]56270.0660.4426No
28LONRF2LON peptidase N-terminal domain and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:24788]68020.0000.4109No
29AC013270.1novel transcript68810.0000.4088No
30ANKRD36ankyrin repeat domain 36 [Source:HGNC Symbol;Acc:HGNC:24079]73200.0000.3969No
31PROM2prominin 2 [Source:HGNC Symbol;Acc:HGNC:20685]79150.0000.3808No
32OR7E102Polfactory receptor family 7 subfamily E member 102 pseudogene [Source:HGNC Symbol;Acc:HGNC:15043]79870.0000.3789No
33TBC1D8-AS1TBC1D8 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:52782]83970.0000.3679No
34LINC01104long intergenic non-protein coding RNA 1104 [Source:HGNC Symbol;Acc:HGNC:49226]85340.0000.3642No
35IGKV3OR2-5immunoglobulin kappa variable 3/OR2-5 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5832]87390.0000.3587No
36FER1L5fer-1 like family member 5 [Source:HGNC Symbol;Acc:HGNC:19044]89640.0000.3526No
37LYG1lysozyme g1 [Source:HGNC Symbol;Acc:HGNC:27014]90370.0000.3507No
38LYG2lysozyme g2 [Source:HGNC Symbol;Acc:HGNC:29615]90380.0000.3507No
39TRIM43CPtripartite motif containing 43C, pseudogene [Source:HGNC Symbol;Acc:HGNC:43981]92650.0000.3445No
40IGKV1OR2-6immunoglobulin kappa variable 1/OR2-6 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5770]96260.0000.3348No
41IGKV1OR2-9immunoglobulin kappa variable 1/OR2-9 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5771]96290.0000.3347No
42IGKV1OR2-3immunoglobulin kappa variable 1/OR2-3 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5769]96360.0000.3346No
43FAHD2Bfumarylacetoacetate hydrolase domain containing 2B [Source:HGNC Symbol;Acc:HGNC:25318]100690.0000.3229No
44FAM178Bfamily with sequence similarity 178 member B [Source:HGNC Symbol;Acc:HGNC:28036]102320.0000.3185No
45FABP7P2fatty acid binding protein 7 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:41952]106070.0000.3084No
46ANKRD20A8Pankyrin repeat domain 20 family member A8, pseudogene [Source:HGNC Symbol;Acc:HGNC:23666]107040.0000.3058No
47RNU4-84PRNA, U4 small nuclear 84, pseudogene [Source:HGNC Symbol;Acc:HGNC:47020]108790.0000.3011No
48RNU6-1320PRNA, U6 small nuclear 1320, pseudogene [Source:HGNC Symbol;Acc:HGNC:48283]112090.0000.2922No
49SLC2AXP1solute carrier family 2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:31077]113020.0000.2897No
50AFF3AF4/FMR2 family member 3 [Source:HGNC Symbol;Acc:HGNC:6473]113270.0000.2890No
51LINC00342long intergenic non-protein coding RNA 342 [Source:HGNC Symbol;Acc:HGNC:42470]128510.0000.2478No
52MTCO1P48MT-CO1 pseudogene 48 [Source:HGNC Symbol;Acc:HGNC:52113]129620.0000.2449No
53MTCO3P45MT-CO3 pseudogene 45 [Source:HGNC Symbol;Acc:HGNC:52148]139290.0000.2187No
54RFX8RFX family member 8, lacking RFX DNA binding domain [Source:HGNC Symbol;Acc:HGNC:37253]142210.0000.2109No
55RNU7-46PRNA, U7 small nuclear 46 pseudogene [Source:HGNC Symbol;Acc:HGNC:34142]146930.0000.1981No
56TRIM43tripartite motif containing 43 [Source:HGNC Symbol;Acc:HGNC:19015]151610.0000.1855No
57MIR5696microRNA 5696 [Source:HGNC Symbol;Acc:HGNC:43516]152320.0000.1836No
58CNN2P8calponin 2 pseudogene 8 [Source:HGNC Symbol;Acc:HGNC:39533]153030.0000.1817No
59RN7SL575PRNA, 7SL, cytoplasmic 575, pseudogene [Source:HGNC Symbol;Acc:HGNC:46591]156880.0000.1713No
60IL1R1interleukin 1 receptor type 1 [Source:HGNC Symbol;Acc:HGNC:5993]158210.0000.1677No
61IL1R2interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]158220.0000.1677No
62ZAP70zeta chain of T cell receptor associated protein kinase 70 [Source:HGNC Symbol;Acc:HGNC:12858]159540.0000.1642No
63RN7SL313PRNA, 7SL, cytoplasmic 313, pseudogene [Source:HGNC Symbol;Acc:HGNC:46329]162450.0000.1563No
64ADRA2Badrenoceptor alpha 2B [Source:HGNC Symbol;Acc:HGNC:282]164460.0000.1509No
65AC097374.1pseudogene similar to part of asparagine synthetase (ASNS)171280.0000.1325No
66AL845331.1putative aquaporin-7-like protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:100509620]176360.0000.1188No
67ANKRD36Cankyrin repeat domain 36C [Source:HGNC Symbol;Acc:HGNC:32946]177750.0000.1150No
68ANKRD36Bankyrin repeat domain 36B [Source:HGNC Symbol;Acc:HGNC:29333]177810.0000.1149No
69STARD7-AS1STARD7 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40827]181770.0000.1042No
70IGKV1OR2-11immunoglobulin kappa variable 1/OR2-11 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5768]183350.0000.1000No
71IGKV2OR2-7Dimmunoglobulin kappa variable 2/OR2-7D (pseudogene) [Source:HGNC Symbol;Acc:HGNC:37489]184590.0000.0966No
72IGKV2OR2-10immunoglobulin kappa variable 2/OR2-10 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5806]185060.0000.0954No
73MALmal, T cell differentiation protein [Source:HGNC Symbol;Acc:HGNC:6817]188250.0000.0868No
74RNA5SP101RNA, 5S ribosomal pseudogene 101 [Source:HGNC Symbol;Acc:HGNC:42899]189430.0000.0836No
75NMSneuromedin S [Source:HGNC Symbol;Acc:HGNC:32203]192530.0000.0753No
76NANOGNBP1NANOGNB pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42158]193210.0000.0735No
77LINC01870long intergenic non-protein coding RNA 1870 [Source:HGNC Symbol;Acc:HGNC:52689]194320.0000.0705No
78LINC01868long intergenic non-protein coding RNA 1868 [Source:HGNC Symbol;Acc:HGNC:52688]194390.0000.0703No
79LINC01849long intergenic non-protein coding RNA 1849 [Source:HGNC Symbol;Acc:HGNC:52665]195390.0000.0676No
80TEKT4tektin 4 [Source:HGNC Symbol;Acc:HGNC:31012]197280.0000.0626No
81GPAT2P2glycerol-3-phosphate acyltransferase 2 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:52331]199200.0000.0574No
82GPAT2P1glycerol-3-phosphate acyltransferase 2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:52330]199240.0000.0573No
83RNU7-96PRNA, U7 small nuclear 96 pseudogene [Source:HGNC Symbol;Acc:HGNC:45630]207770.0000.0343No
84MIR3127microRNA 3127 [Source:HGNC Symbol;Acc:HGNC:38269]209330.0000.0301No
85RNU4-8PRNA, U4 small nuclear 8, pseudogene [Source:HGNC Symbol;Acc:HGNC:10195]211480.0000.0243No
86VWA3Bvon Willebrand factor A domain containing 3B [Source:HGNC Symbol;Acc:HGNC:28385]212430.0000.0217No
87C2orf92chromosome 2 open reading frame 92 [Source:HGNC Symbol;Acc:HGNC:49272]213000.0000.0202No
88C2orf15chromosome 2 open reading frame 15 [Source:HGNC Symbol;Acc:HGNC:28436]214280.0000.0168No
89TRIM64FPtripartite motif containing 64F, pseudogene [Source:HGNC Symbol;Acc:HGNC:43976]215480.0000.0136No
90ZNF514zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]217530.0000.0080No
91CYP4F32Pcytochrome P450 family 4 subfamily F member 32, pseudogene [Source:HGNC Symbol;Acc:HGNC:39951]227200.000-0.0181No
92CREG2cellular repressor of E1A stimulated genes 2 [Source:HGNC Symbol;Acc:HGNC:14272]229730.000-0.0249No
93KCNIP3potassium voltage-gated channel interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:15523]237320.000-0.0454No
94UBTFL3UBTF like 3 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35402]238270.000-0.0480No
95UBTFL6UBTF like 6 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35406]238300.000-0.0480No
96UBTFL5UBTF like 5 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:35405]238310.000-0.0480No
97RN7SL210PRNA, 7SL, cytoplasmic 210, pseudogene [Source:HGNC Symbol;Acc:HGNC:46226]238900.000-0.0496No
98HMGN1P36high mobility group nucleosome binding domain 1 pseudogene 36 [Source:HGNC Symbol;Acc:HGNC:39380]248750.000-0.0762No
99TRIM43Btripartite motif containing 43B [Source:HGNC Symbol;Acc:HGNC:37146]248970.000-0.0768No
100GPAT2glycerol-3-phosphate acyltransferase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:27168]252440.000-0.0861No
101TRIM51JPtripartite motif-containing 51J, pseudogene [Source:HGNC Symbol;Acc:HGNC:43978]259030.000-0.1039No
102CNN2P11calponin 2 pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:39536]267520.000-0.1269No
103IGKV2OR2-2immunoglobulin kappa variable 2/OR2-2 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5808]268180.000-0.1286No
104IGKV2OR2-1immunoglobulin kappa variable 2/OR2-1 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5805]268200.000-0.1287No
105IGKV2OR2-8immunoglobulin kappa variable 2/OR2-8 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5811]268320.000-0.1290No
106IGKV2OR2-7immunoglobulin kappa variable 2/OR2-7 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5810]268330.000-0.1290No
107MRPS5mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498]28088-0.118-0.1606No
108RPS24P6ribosomal protein S24 pseudogene 6 [Source:HGNC Symbol;Acc:HGNC:36240]28375-0.161-0.1651No
109ACTR1Bactin related protein 1B [Source:HGNC Symbol;Acc:HGNC:168]28568-0.185-0.1667No
110LMAN2Llectin, mannose binding 2 like [Source:HGNC Symbol;Acc:HGNC:19263]28653-0.195-0.1651No
111CNGA3cyclic nucleotide gated channel subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:2150]28673-0.199-0.1617No
112FAHD2Afumarylacetoacetate hydrolase domain containing 2A [Source:HGNC Symbol;Acc:HGNC:24252]28920-0.237-0.1636No
113CNNM4cyclin and CBS domain divalent metal cation transport mediator 4 [Source:HGNC Symbol;Acc:HGNC:105]29289-0.294-0.1678No
114MRPL30mitochondrial ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:14036]29836-0.374-0.1752No
115NPAS2neuronal PAS domain protein 2 [Source:HGNC Symbol;Acc:HGNC:7895]30018-0.400-0.1722No
116COX5Bcytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]30470-0.471-0.1751No
117RPL31ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]30720-0.514-0.1716No
118SNRNP200small nuclear ribonucleoprotein U5 subunit 200 [Source:HGNC Symbol;Acc:HGNC:30859]31777-0.704-0.1863No
119TSGA10testis specific 10 [Source:HGNC Symbol;Acc:HGNC:14927]31929-0.738-0.1758No
120FAHD2CPfumarylacetoacetate hydrolase domain containing 2C, pseudogene [Source:HGNC Symbol;Acc:HGNC:44135]32089-0.777-0.1648No
121MAP4K4mitogen-activated protein kinase kinase kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6866]32324-0.844-0.1544No
122NEURL3neuralized E3 ubiquitin protein ligase 3 [Source:HGNC Symbol;Acc:HGNC:25162]32801-0.973-0.1481No
123CHST10carbohydrate sulfotransferase 10 [Source:HGNC Symbol;Acc:HGNC:19650]32822-0.981-0.1292No
124REV1REV1 DNA directed polymerase [Source:HGNC Symbol;Acc:HGNC:14060]32925-1.014-0.1119No
125INPP4Ainositol polyphosphate-4-phosphatase type I A [Source:HGNC Symbol;Acc:HGNC:6074]33536-1.204-0.1047No
126LIPT1lipoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:29569]33615-1.236-0.0823No
127TBC1D8TBC1 domain family member 8 [Source:HGNC Symbol;Acc:HGNC:17791]33709-1.266-0.0598No
128CNNM3cyclin and CBS domain divalent metal cation transport mediator 3 [Source:HGNC Symbol;Acc:HGNC:104]33967-1.360-0.0399No
129ANKRD39ankyrin repeat domain 39 [Source:HGNC Symbol;Acc:HGNC:28640]34360-1.510-0.0207No
130STARD7StAR related lipid transfer domain containing 7 [Source:HGNC Symbol;Acc:HGNC:18063]34583-1.5960.0048No
131NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36546-3.1870.0147No
Table: GSEA details [plain text format]



Fig 2: CHR2Q11   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR2Q11: Random ES distribution   
Gene set null distribution of ES for CHR2Q11