Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetKONG_E2F3_TARGETS
Enrichment Score (ES)-0.8285865
Normalized Enrichment Score (NES)-1.7112072
Nominal p-value0.0
FDR q-value1.9918798E-4
FWER p-Value0.002
Table: GSEA Results Summary



Fig 1: Enrichment plot: KONG_E2F3_TARGETS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1NR1D1nuclear receptor subfamily 1 group D member 1 [Source:HGNC Symbol;Acc:HGNC:7962]6282.098-0.0061No
2GAS5growth arrest specific 5 [Source:HGNC Symbol;Acc:HGNC:16355]6652.0180.0034No
3DCKdeoxycytidine kinase [Source:HGNC Symbol;Acc:HGNC:2704]12701.333-0.0061No
4E2F3E2F transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3115]17531.057-0.0136No
5TAL2TAL bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11557]18411.018-0.0107No
6SRSF7serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789]21380.881-0.0142No
7MED1mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]24310.768-0.0181No
8H2AC4H2A clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4734]46670.241-0.0772No
9NUP50nucleoporin 50 [Source:HGNC Symbol;Acc:HGNC:8065]47260.233-0.0776No
10IGF2BP1insulin like growth factor 2 mRNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:28866]55060.091-0.0982No
11H4C15H4 clustered histone 15 [Source:HGNC Symbol;Acc:HGNC:29607]124940.000-0.2871No
12CDCA5cell division cycle associated 5 [Source:HGNC Symbol;Acc:HGNC:14626]166480.000-0.3993No
13PRLprolactin [Source:HGNC Symbol;Acc:HGNC:9445]200360.000-0.4909No
14PSORS1C2psoriasis susceptibility 1 candidate 2 [Source:HGNC Symbol;Acc:HGNC:17199]207020.000-0.5089No
15F13A1coagulation factor XIII A chain [Source:HGNC Symbol;Acc:HGNC:3531]227250.000-0.5635No
16GP1BAglycoprotein Ib platelet subunit alpha [Source:HGNC Symbol;Acc:HGNC:4439]231380.000-0.5746No
17CENPHcentromere protein H [Source:HGNC Symbol;Acc:HGNC:17268]239820.000-0.5974No
18MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]28441-0.170-0.7171No
19SYCE2synaptonemal complex central element protein 2 [Source:HGNC Symbol;Acc:HGNC:27411]28935-0.239-0.7292No
20HJURPHolliday junction recognition protein [Source:HGNC Symbol;Acc:HGNC:25444]29749-0.363-0.7493No
21FBXO45F-box protein 45 [Source:HGNC Symbol;Acc:HGNC:29148]29863-0.377-0.7504No
22MAPK8mitogen-activated protein kinase 8 [Source:HGNC Symbol;Acc:HGNC:6881]29911-0.385-0.7496No
23RPL12ribosomal protein L12 [Source:HGNC Symbol;Acc:HGNC:10302]30324-0.449-0.7584No
24TAF1DTATA-box binding protein associated factor, RNA polymerase I subunit D [Source:HGNC Symbol;Acc:HGNC:28759]30592-0.493-0.7631No
25RPRD1Bregulation of nuclear pre-mRNA domain containing 1B [Source:HGNC Symbol;Acc:HGNC:16209]31662-0.682-0.7885No
26TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32418-0.869-0.8044No
27HLXH2.0 like homeobox [Source:HGNC Symbol;Acc:HGNC:4978]33314-1.132-0.8227Yes
28FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33397-1.158-0.8189Yes
29DNA2DNA replication helicase/nuclease 2 [Source:HGNC Symbol;Acc:HGNC:2939]33412-1.163-0.8133Yes
30FAM111Afamily with sequence similarity 111 member A [Source:HGNC Symbol;Acc:HGNC:24725]33488-1.187-0.8092Yes
31RBBP8RB binding protein 8, endonuclease [Source:HGNC Symbol;Acc:HGNC:9891]33518-1.198-0.8038Yes
32CDC7cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]33884-1.331-0.8068Yes
33SPDL1spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]33890-1.332-0.8000Yes
34CENPQcentromere protein Q [Source:HGNC Symbol;Acc:HGNC:21347]33909-1.339-0.7936Yes
35HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]34312-1.491-0.7967Yes
36LMNB1lamin B1 [Source:HGNC Symbol;Acc:HGNC:6637]34439-1.540-0.7921Yes
37RBL1RB transcriptional corepressor like 1 [Source:HGNC Symbol;Acc:HGNC:9893]34459-1.548-0.7846Yes
38RPL3ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]34647-1.624-0.7813Yes
39PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34837-1.712-0.7775Yes
40SKP2S-phase kinase associated protein 2 [Source:HGNC Symbol;Acc:HGNC:10901]34884-1.741-0.7698Yes
41USP1ubiquitin specific peptidase 1 [Source:HGNC Symbol;Acc:HGNC:12607]35006-1.806-0.7637Yes
42MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35062-1.840-0.7556Yes
43PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35085-1.852-0.7467Yes
44RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]35198-1.930-0.7397Yes
45CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]35199-1.931-0.7297Yes
46NASPnuclear autoantigenic sperm protein [Source:HGNC Symbol;Acc:HGNC:7644]35290-1.989-0.7218Yes
47RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]35318-2.003-0.7122Yes
48AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35380-2.050-0.7032Yes
49INCENPinner centromere protein [Source:HGNC Symbol;Acc:HGNC:6058]35432-2.082-0.6938Yes
50ERCC6LERCC excision repair 6 like, spindle assembly checkpoint helicase [Source:HGNC Symbol;Acc:HGNC:20794]35604-2.200-0.6871Yes
51CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]35605-2.200-0.6757Yes
52RAD54LRAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]35638-2.227-0.6650Yes
53BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]35708-2.283-0.6551Yes
54FIGNL1fidgetin like 1 [Source:HGNC Symbol;Acc:HGNC:13286]35714-2.288-0.6434Yes
55SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]35759-2.331-0.6325Yes
56CBX2chromobox 2 [Source:HGNC Symbol;Acc:HGNC:1552]35846-2.418-0.6223Yes
57DEPDC1DEP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:22949]35888-2.450-0.6107Yes
58SPC25SPC25 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:24031]35933-2.484-0.5991Yes
59TPX2TPX2 microtubule nucleation factor [Source:HGNC Symbol;Acc:HGNC:1249]35941-2.490-0.5864Yes
60DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35981-2.530-0.5743Yes
61CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]35993-2.546-0.5614Yes
62EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36065-2.624-0.5498Yes
63PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36068-2.625-0.5363Yes
64TACC3transforming acidic coiled-coil containing protein 3 [Source:HGNC Symbol;Acc:HGNC:11524]36069-2.626-0.5227Yes
65NCAPG2non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]36122-2.676-0.5102Yes
66MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]36125-2.680-0.4964Yes
67HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36191-2.745-0.4840Yes
68BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]36239-2.787-0.4708Yes
69ASF1Banti-silencing function 1B histone chaperone [Source:HGNC Symbol;Acc:HGNC:20996]36251-2.795-0.4566Yes
70KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]36255-2.798-0.4422Yes
71PSIP1PC4 and SFRS1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9527]36305-2.851-0.4288Yes
72NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]36342-2.919-0.4147Yes
73UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]36357-2.930-0.3999Yes
74CENPFcentromere protein F [Source:HGNC Symbol;Acc:HGNC:1857]36421-3.011-0.3860Yes
75MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]36439-3.036-0.3708Yes
76H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36457-3.057-0.3554Yes
77TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36461-3.062-0.3396Yes
78SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36473-3.076-0.3240Yes
79UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36476-3.083-0.3081Yes
80PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]36502-3.111-0.2927Yes
81CCNFcyclin F [Source:HGNC Symbol;Acc:HGNC:1591]36511-3.130-0.2767Yes
82IQGAP3IQ motif containing GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:20669]36519-3.139-0.2606Yes
83CCNE1cyclin E1 [Source:HGNC Symbol;Acc:HGNC:1589]36523-3.149-0.2444Yes
84NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36546-3.187-0.2285Yes
85RACGAP1Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]36654-3.353-0.2141Yes
86CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]36660-3.369-0.1968Yes
87CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]36664-3.374-0.1794Yes
88NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36691-3.417-0.1624Yes
89CENPKcentromere protein K [Source:HGNC Symbol;Acc:HGNC:29479]36705-3.438-0.1449Yes
90KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36709-3.440-0.1272Yes
91KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36710-3.442-0.1094Yes
92BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36780-3.580-0.0928Yes
93NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36802-3.632-0.0745Yes
94PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]36817-3.672-0.0559Yes
95NCAPD2non-SMC condensin I complex subunit D2 [Source:HGNC Symbol;Acc:HGNC:24305]36827-3.702-0.0370Yes
96CHAF1Bchromatin assembly factor 1 subunit B [Source:HGNC Symbol;Acc:HGNC:1911]36881-3.841-0.0185Yes
97TK1thymidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:11830]37070-4.6660.0005Yes
Table: GSEA details [plain text format]



Fig 2: KONG_E2F3_TARGETS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KONG_E2F3_TARGETS: Random ES distribution   
Gene set null distribution of ES for KONG_E2F3_TARGETS