Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetGNF2_SMC4L1
Enrichment Score (ES)-0.818839
Normalized Enrichment Score (NES)-1.6488672
Nominal p-value0.0
FDR q-value3.7431362E-4
FWER p-Value0.006
Table: GSEA Results Summary



Fig 1: Enrichment plot: GNF2_SMC4L1   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GAR1GAR1 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14264]9781.598-0.0170No
2EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]15821.153-0.0265No
3CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]24280.770-0.0448No
4HNRNPABheterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:HGNC:5034]25740.721-0.0445No
5MRPL35mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:14489]28450.637-0.0480No
6SRSF1serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780]28630.632-0.0448No
7NUP153nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]35130.477-0.0595No
8DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]38060.420-0.0649No
9METAP2methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:16672]50940.162-0.0987No
10SNRPD1small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158]57820.036-0.1171No
11SERBP1SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17860]59620.001-0.1219No
12ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]260190.000-0.6639No
13SNRPGsmall nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163]27879-0.086-0.7136No
14DHFRdihydrofolate reductase [Source:HGNC Symbol;Acc:HGNC:2861]29048-0.257-0.7437No
15ANP32Eacidic nuclear phosphoprotein 32 family member E [Source:HGNC Symbol;Acc:HGNC:16673]29854-0.377-0.7632No
16COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31382-0.630-0.8007No
17SLBPstem-loop binding protein [Source:HGNC Symbol;Acc:HGNC:10904]31383-0.630-0.7970No
18HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32189-0.808-0.8140Yes
19VRK1VRK serine/threonine kinase 1 [Source:HGNC Symbol;Acc:HGNC:12718]32368-0.856-0.8138Yes
20HNRNPA3P1heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:13729]32379-0.859-0.8090Yes
21TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32418-0.869-0.8049Yes
22SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]32525-0.892-0.8025Yes
23SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit [Source:HGNC Symbol;Acc:HGNC:11465]32601-0.917-0.7992Yes
24ANP32Bacidic nuclear phosphoprotein 32 family member B [Source:HGNC Symbol;Acc:HGNC:16677]32602-0.917-0.7938Yes
25PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32753-0.958-0.7922Yes
26RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33208-1.098-0.7980Yes
27FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33397-1.158-0.7962Yes
28DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]34013-1.377-0.8047Yes
29DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]34095-1.401-0.7987Yes
30PCCBpropionyl-CoA carboxylase subunit beta [Source:HGNC Symbol;Acc:HGNC:8654]34294-1.485-0.7953Yes
31HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]34312-1.491-0.7870Yes
32CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]34381-1.518-0.7799Yes
33MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34684-1.643-0.7783Yes
34PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34837-1.712-0.7724Yes
35EXOSC8exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035]34907-1.757-0.7639Yes
36USP1ubiquitin specific peptidase 1 [Source:HGNC Symbol;Acc:HGNC:12607]35006-1.806-0.7559Yes
37MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35062-1.840-0.7466Yes
38PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35085-1.852-0.7362Yes
39PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]35101-1.865-0.7257Yes
40FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]35131-1.888-0.7153Yes
41DEKDEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:2768]35153-1.902-0.7047Yes
42GINS2GINS complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24575]35192-1.927-0.6944Yes
43NASPnuclear autoantigenic sperm protein [Source:HGNC Symbol;Acc:HGNC:7644]35290-1.989-0.6853Yes
44RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]35318-2.003-0.6742Yes
45AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35380-2.050-0.6638Yes
46ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]35412-2.072-0.6524Yes
47DNAJC9DnaJ heat shock protein family (Hsp40) member C9 [Source:HGNC Symbol;Acc:HGNC:19123]35510-2.132-0.6425Yes
48SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]35759-2.331-0.6355Yes
49GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]35776-2.350-0.6221Yes
50GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]35779-2.351-0.6083Yes
51MCM5minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]35807-2.374-0.5950Yes
52RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35830-2.402-0.5815Yes
53DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35981-2.530-0.5706Yes
54CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]35993-2.546-0.5559Yes
55CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36083-2.637-0.5428Yes
56HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36191-2.745-0.5295Yes
57SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]36199-2.753-0.5135Yes
58BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]36239-2.787-0.4982Yes
59FBXO5F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]36281-2.827-0.4826Yes
60MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]36350-2.926-0.4672Yes
61RRM1ribonucleotide reductase catalytic subunit M1 [Source:HGNC Symbol;Acc:HGNC:10451]36359-2.931-0.4502Yes
62POLE2DNA polymerase epsilon 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9178]36361-2.936-0.4329Yes
63CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36367-2.940-0.4158Yes
64CENPFcentromere protein F [Source:HGNC Symbol;Acc:HGNC:1857]36421-3.011-0.3994Yes
65DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36426-3.017-0.3818Yes
66H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36457-3.057-0.3646Yes
67TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36461-3.062-0.3467Yes
68SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36473-3.076-0.3288Yes
69MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]36575-3.228-0.3126Yes
70TMPOthymopoietin [Source:HGNC Symbol;Acc:HGNC:11875]36629-3.321-0.2944Yes
71RACGAP1Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]36654-3.353-0.2753Yes
72KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]36655-3.354-0.2556Yes
73CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]36660-3.369-0.2359Yes
74KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36709-3.440-0.2169Yes
75CBX3chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]36752-3.519-0.1973Yes
76NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36802-3.632-0.1772Yes
77CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]36812-3.660-0.1559Yes
78PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]36817-3.672-0.1344Yes
79FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36828-3.703-0.1129Yes
80ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36920-3.941-0.0921Yes
81MSH2mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]36935-3.972-0.0691Yes
82E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36953-4.019-0.0459Yes
83NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36994-4.180-0.0224Yes
84TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]37006-4.2360.0023Yes
Table: GSEA details [plain text format]



Fig 2: GNF2_SMC4L1   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GNF2_SMC4L1: Random ES distribution   
Gene set null distribution of ES for GNF2_SMC4L1