Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetCSR_EARLY_UP.V1_DN
Enrichment Score (ES)-0.59627914
Normalized Enrichment Score (NES)-1.2555902
Nominal p-value0.05934066
FDR q-value0.3385031
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_EARLY_UP.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]914.1060.0329No
2IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]1034.0260.0672No
3TRIM56tripartite motif containing 56 [Source:HGNC Symbol;Acc:HGNC:19028]3892.6480.0823No
4IP6K2inositol hexakisphosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:17313]7361.9180.0894No
5MINDY1MINDY lysine 48 deubiquitinase 1 [Source:HGNC Symbol;Acc:HGNC:25648]9791.5960.0966No
6DENND11DENN domain containing 11 [Source:HGNC Symbol;Acc:HGNC:29472]13911.2520.0963No
7NR1H3nuclear receptor subfamily 1 group H member 3 [Source:HGNC Symbol;Acc:HGNC:7966]14131.2400.1064No
8APBB3amyloid beta precursor protein binding family B member 3 [Source:HGNC Symbol;Acc:HGNC:20708]15021.1870.1142No
9ZNF585Bzinc finger protein 585B [Source:HGNC Symbol;Acc:HGNC:30948]15761.1580.1222No
10ELMOD2ELMO domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28111]17881.0410.1254No
11LRIG2leucine rich repeats and immunoglobulin like domains 2 [Source:HGNC Symbol;Acc:HGNC:20889]22410.8390.1204No
12RNF20ring finger protein 20 [Source:HGNC Symbol;Acc:HGNC:10062]32780.5330.0970No
13GRHL1grainyhead like transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:17923]33720.5120.0989No
14RABGAP1RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]35450.4710.0983No
15FBXO38F-box protein 38 [Source:HGNC Symbol;Acc:HGNC:28844]36590.4470.0991No
16DHRS3dehydrogenase/reductase 3 [Source:HGNC Symbol;Acc:HGNC:17693]50150.1760.0639No
17ZNF500zinc finger protein 500 [Source:HGNC Symbol;Acc:HGNC:23716]51210.1620.0625No
18PLCD1phospholipase C delta 1 [Source:HGNC Symbol;Acc:HGNC:9060]51880.1540.0620No
19GTPBP8GTP binding protein 8 (putative) [Source:HGNC Symbol;Acc:HGNC:25007]54680.1000.0553No
20TCAIMT cell activation inhibitor, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25241]54900.0950.0556No
21CC2D1Acoiled-coil and C2 domain containing 1A [Source:HGNC Symbol;Acc:HGNC:30237]57350.0470.0494No
22DAAM2dishevelled associated activator of morphogenesis 2 [Source:HGNC Symbol;Acc:HGNC:18143]65840.0000.0264No
23ASPAaspartoacylase [Source:HGNC Symbol;Acc:HGNC:756]74270.0000.0037No
24PMS2P1PMS1 homolog 2, mismatch repair system component pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:9123]75640.000-0.0000No
25TDRD6tudor domain containing 6 [Source:HGNC Symbol;Acc:HGNC:21339]87500.000-0.0321No
26NDNFneuron derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:26256]92040.000-0.0443No
27HSPG2heparan sulfate proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:5273]100310.000-0.0667No
28GFRA1GDNF family receptor alpha 1 [Source:HGNC Symbol;Acc:HGNC:4243]109400.000-0.0912No
29ERAP2endoplasmic reticulum aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:29499]111910.000-0.0980No
30COL1A1collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]127250.000-0.1395No
31GSDMBgasdermin B [Source:HGNC Symbol;Acc:HGNC:23690]130290.000-0.1477No
32CDRT4CMT1A duplicated region transcript 4 [Source:HGNC Symbol;Acc:HGNC:14383]131970.000-0.1522No
33GDF5growth differentiation factor 5 [Source:HGNC Symbol;Acc:HGNC:4220]132580.000-0.1538No
34PDE5Aphosphodiesterase 5A [Source:HGNC Symbol;Acc:HGNC:8784]133460.000-0.1562No
35NYNRINNYN domain and retroviral integrase containing [Source:HGNC Symbol;Acc:HGNC:20165]137910.000-0.1682No
36HOXA10homeobox A10 [Source:HGNC Symbol;Acc:HGNC:5100]141390.000-0.1776No
37STOX1storkhead box 1 [Source:HGNC Symbol;Acc:HGNC:23508]158040.000-0.2226No
38MAB21L1mab-21 like 1 [Source:HGNC Symbol;Acc:HGNC:6757]158100.000-0.2227No
39SLC7A14solute carrier family 7 member 14 [Source:HGNC Symbol;Acc:HGNC:29326]161900.000-0.2330No
40PAPLNpapilin, proteoglycan like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]178410.000-0.2776No
41C14orf132chromosome 14 open reading frame 132 [Source:HGNC Symbol;Acc:HGNC:20346]178590.000-0.2781No
42IGLL1immunoglobulin lambda like polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:5870]183730.000-0.2920No
43SULF1sulfatase 1 [Source:HGNC Symbol;Acc:HGNC:20391]216740.000-0.3812No
44ZNF337zinc finger protein 337 [Source:HGNC Symbol;Acc:HGNC:15809]223940.000-0.4007No
45ZNF302zinc finger protein 302 [Source:HGNC Symbol;Acc:HGNC:13848]224380.000-0.4018No
46CYP2R1cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]226340.000-0.4071No
47CAVIN2caveolae associated protein 2 [Source:HGNC Symbol;Acc:HGNC:10690]235090.000-0.4308No
48ALDH1A1aldehyde dehydrogenase 1 family member A1 [Source:HGNC Symbol;Acc:HGNC:402]255320.000-0.4855No
49SNPHsyntaphilin [Source:HGNC Symbol;Acc:HGNC:15931]256930.000-0.4898No
50NSUN5P2NSUN5 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:16609]258870.000-0.4950No
51XAF1XIAP associated factor 1 [Source:HGNC Symbol;Acc:HGNC:30932]271360.000-0.5288No
52SLC25A46solute carrier family 25 member 46 [Source:HGNC Symbol;Acc:HGNC:25198]27714-0.064-0.5438No
53ZFP64ZFP64 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:15940]27799-0.077-0.5454No
54SLC9A7solute carrier family 9 member A7 [Source:HGNC Symbol;Acc:HGNC:17123]27895-0.089-0.5472No
55ZNF33Azinc finger protein 33A [Source:HGNC Symbol;Acc:HGNC:13096]28001-0.103-0.5492No
56CROCCP2CROCC pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:28170]28099-0.120-0.5508No
57TENT5Cterminal nucleotidyltransferase 5C [Source:HGNC Symbol;Acc:HGNC:24712]28143-0.127-0.5509No
58DXOdecapping exoribonuclease [Source:HGNC Symbol;Acc:HGNC:2992]28267-0.144-0.5530No
59TAF15TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]28407-0.165-0.5553No
60PHIPpleckstrin homology domain interacting protein [Source:HGNC Symbol;Acc:HGNC:15673]28477-0.175-0.5557No
61STX16syntaxin 16 [Source:HGNC Symbol;Acc:HGNC:11431]28612-0.190-0.5576No
62LTN1listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:13082]29243-0.288-0.5722No
63RAPGEF3Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]29390-0.310-0.5735No
64PAN2poly(A) specific ribonuclease subunit PAN2 [Source:HGNC Symbol;Acc:HGNC:20074]30066-0.408-0.5882No
65SAGS-antigen visual arrestin [Source:HGNC Symbol;Acc:HGNC:10521]30248-0.437-0.5894No
66ADAMTSL4ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]30275-0.443-0.5863No
67ELMOD3ELMO domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26158]30646-0.502-0.5920Yes
68PRRT2proline rich transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:30500]30660-0.504-0.5880Yes
69MOSPD2motile sperm domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28381]30759-0.519-0.5862Yes
70ABCC10ATP binding cassette subfamily C member 10 [Source:HGNC Symbol;Acc:HGNC:52]30794-0.525-0.5826Yes
71MSRB1methionine sulfoxide reductase B1 [Source:HGNC Symbol;Acc:HGNC:14133]30805-0.527-0.5783Yes
72ARL4DADP ribosylation factor like GTPase 4D [Source:HGNC Symbol;Acc:HGNC:656]31040-0.565-0.5798Yes
73EIF4EBP3eukaryotic translation initiation factor 4E binding protein 3 [Source:HGNC Symbol;Acc:HGNC:3290]31048-0.567-0.5751Yes
74ATF7IPactivating transcription factor 7 interacting protein [Source:HGNC Symbol;Acc:HGNC:20092]31106-0.578-0.5716Yes
75TFAP2Atranscription factor AP-2 alpha [Source:HGNC Symbol;Acc:HGNC:11742]31196-0.595-0.5689Yes
76USP33ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]31249-0.602-0.5652Yes
77ZFYVE1zinc finger FYVE-type containing 1 [Source:HGNC Symbol;Acc:HGNC:13180]31338-0.619-0.5622Yes
78AMTaminomethyltransferase [Source:HGNC Symbol;Acc:HGNC:473]31376-0.629-0.5578Yes
79LRRK2leucine rich repeat kinase 2 [Source:HGNC Symbol;Acc:HGNC:18618]31413-0.634-0.5533Yes
80LRIG3leucine rich repeats and immunoglobulin like domains 3 [Source:HGNC Symbol;Acc:HGNC:30991]31518-0.655-0.5505Yes
81STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]31586-0.668-0.5466Yes
82FBXO25F-box protein 25 [Source:HGNC Symbol;Acc:HGNC:13596]31623-0.675-0.5417Yes
83UBN2ubinuclein 2 [Source:HGNC Symbol;Acc:HGNC:21931]32273-0.831-0.5521Yes
84ACYP1acylphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:179]32640-0.927-0.5541Yes
85ZNF467zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]32718-0.950-0.5480Yes
86ACBD4acyl-CoA binding domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23337]32747-0.957-0.5405Yes
87SIX1SIX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10887]32748-0.957-0.5323Yes
88POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]33068-1.052-0.5318Yes
89PEX6peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]33106-1.065-0.5237Yes
90HEBP2heme binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15716]33457-1.174-0.5230Yes
91ALDH1L2aldehyde dehydrogenase 1 family member L2 [Source:HGNC Symbol;Acc:HGNC:26777]33540-1.206-0.5149Yes
92YEATS2YEATS domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25489]33640-1.246-0.5068Yes
93KBTBD6kelch repeat and BTB domain containing 6 [Source:HGNC Symbol;Acc:HGNC:25340]33848-1.319-0.5011Yes
94DCP1Bdecapping mRNA 1B [Source:HGNC Symbol;Acc:HGNC:24451]34099-1.403-0.4958Yes
95OTUD1OTU deubiquitinase 1 [Source:HGNC Symbol;Acc:HGNC:27346]34101-1.406-0.4837Yes
96ARRDC3arrestin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29263]34182-1.441-0.4735Yes
97ZNF226zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]34211-1.452-0.4617Yes
98CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]34240-1.462-0.4499Yes
99SIX5SIX homeobox 5 [Source:HGNC Symbol;Acc:HGNC:10891]34284-1.481-0.4383Yes
100ALDH3B2aldehyde dehydrogenase 3 family member B2 [Source:HGNC Symbol;Acc:HGNC:411]34382-1.518-0.4279Yes
101BRD8bromodomain containing 8 [Source:HGNC Symbol;Acc:HGNC:19874]34385-1.519-0.4149Yes
102NDUFAF7NADH:ubiquinone oxidoreductase complex assembly factor 7 [Source:HGNC Symbol;Acc:HGNC:28816]34568-1.589-0.4061Yes
103UFSP2UFM1 specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:25640]34671-1.638-0.3948Yes
104BBC3BCL2 binding component 3 [Source:HGNC Symbol;Acc:HGNC:17868]34742-1.670-0.3823Yes
105ADMadrenomedullin [Source:HGNC Symbol;Acc:HGNC:259]34769-1.684-0.3685Yes
106NATD1N-acetyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30770]34878-1.739-0.3565Yes
107SKP2S-phase kinase associated protein 2 [Source:HGNC Symbol;Acc:HGNC:10901]34884-1.741-0.3416Yes
108NPHP3nephrocystin 3 [Source:HGNC Symbol;Acc:HGNC:7907]34905-1.756-0.3271Yes
109HBP1HMG-box transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:23200]35110-1.871-0.3165Yes
110MPPE1metallophosphoesterase 1 [Source:HGNC Symbol;Acc:HGNC:15988]35161-1.907-0.3014Yes
111NMT2N-myristoyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:7858]35232-1.953-0.2865Yes
112DDX17DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]35295-1.993-0.2711Yes
113AKIP1A-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:1170]35351-2.026-0.2551Yes
114CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35418-2.075-0.2390Yes
115LDB1LIM domain binding 1 [Source:HGNC Symbol;Acc:HGNC:6532]35645-2.232-0.2260Yes
116ING4inhibitor of growth family member 4 [Source:HGNC Symbol;Acc:HGNC:19423]35684-2.264-0.2075Yes
117CKBcreatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]35726-2.303-0.1888Yes
118SLC16A7solute carrier family 16 member 7 [Source:HGNC Symbol;Acc:HGNC:10928]35741-2.320-0.1692Yes
119ANKZF1ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:25527]35841-2.411-0.1512Yes
120MRI1methylthioribose-1-phosphate isomerase 1 [Source:HGNC Symbol;Acc:HGNC:28469]35989-2.541-0.1333Yes
121C2CD5C2 calcium dependent domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29062]36113-2.665-0.1137Yes
122FUT10fucosyltransferase 10 [Source:HGNC Symbol;Acc:HGNC:19234]36154-2.712-0.0914Yes
123TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36442-3.043-0.0730Yes
124FZD2frizzled class receptor 2 [Source:HGNC Symbol;Acc:HGNC:4040]36533-3.167-0.0482Yes
125ACCS1-aminocyclopropane-1-carboxylate synthase homolog (inactive) [Source:HGNC Symbol;Acc:HGNC:23989]36782-3.588-0.0240Yes
126WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36844-3.7550.0067Yes
Table: GSEA details [plain text format]



Fig 2: CSR_EARLY_UP.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_EARLY_UP.V1_DN: Random ES distribution   
Gene set null distribution of ES for CSR_EARLY_UP.V1_DN