Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetCSR_LATE_UP.V1_UP
Enrichment Score (ES)-0.6220803
Normalized Enrichment Score (NES)-1.3284005
Nominal p-value0.0105152475
FDR q-value0.15182865
FWER p-Value0.916
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_LATE_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]634.3820.0199No
2PARP11poly(ADP-ribose) polymerase family member 11 [Source:HGNC Symbol;Acc:HGNC:1186]1163.9570.0379No
3MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]1793.5680.0538No
4CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]3062.9080.0647No
5GTF3C6general transcription factor IIIC subunit 6 [Source:HGNC Symbol;Acc:HGNC:20872]8691.7340.0580No
6RPF2ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]9701.6060.0632No
7WSB2WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]11461.4300.0655No
8TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]13871.2540.0652No
9MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]15491.1740.0666No
10PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]16601.1110.0691No
11MT2Ametallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406]17011.0910.0734No
12MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]17171.0800.0783No
13ELOCelongin C [Source:HGNC Symbol;Acc:HGNC:11617]18121.0280.0808No
14EEF1E1eukaryotic translation elongation factor 1 epsilon 1 [Source:HGNC Symbol;Acc:HGNC:3212]18361.0190.0852No
15PSMD14proteasome 26S subunit, non-ATPase 14 [Source:HGNC Symbol;Acc:HGNC:16889]19270.9820.0876No
16EIF5Aeukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:HGNC:3300]19370.9770.0922No
17FARSBphenylalanyl-tRNA synthetase subunit beta [Source:HGNC Symbol;Acc:HGNC:17800]19410.9740.0969No
18EML1EMAP like 1 [Source:HGNC Symbol;Acc:HGNC:3330]19500.9690.1014No
19ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]20780.9090.1025No
20ASB6ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]21240.8860.1056No
21PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]24330.7670.1010No
22MAPRE1microtubule associated protein RP/EB family member 1 [Source:HGNC Symbol;Acc:HGNC:6890]26090.7060.0998No
23AHSA1activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]29990.6020.0922No
24SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]30120.6000.0948No
25FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]31960.5540.0926No
26METMET proto-oncogene, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7029]34770.4870.0874No
27MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]36970.4390.0837No
28TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]37660.4290.0839No
29PSMD2proteasome 26S subunit, non-ATPase 2 [Source:HGNC Symbol;Acc:HGNC:9559]39170.3960.0818No
30PRMT5protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:10894]40180.3700.0809No
31DNAJB11DnaJ heat shock protein family (Hsp40) member B11 [Source:HGNC Symbol;Acc:HGNC:14889]40540.3670.0818No
32EIF3Beukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]41060.3580.0822No
33NKX2-1NK2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11825]42360.3310.0803No
34JPT1Jupiter microtubule associated homolog 1 [Source:HGNC Symbol;Acc:HGNC:14569]43360.3100.0791No
35PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]45640.2640.0743No
36MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]45730.2620.0754No
37PDLIM5PDZ and LIM domain 5 [Source:HGNC Symbol;Acc:HGNC:17468]46940.2370.0733No
38HYPKhuntingtin interacting protein K [Source:HGNC Symbol;Acc:HGNC:18418]48300.2130.0707No
39MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]49830.1810.0674No
40SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]52210.1470.0618No
41UTP18UTP18 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]57230.0500.0484No
42ILF2interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]58520.0210.0451No
43NETO2neuropilin and tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:14644]69290.0000.0159No
44GREM2gremlin 2, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:17655]78820.000-0.0099No
45CDH2cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]91670.000-0.0446No
46SSTR1somatostatin receptor 1 [Source:HGNC Symbol;Acc:HGNC:11330]113400.000-0.1034No
47IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]114830.000-0.1073No
48DCBLD1discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]118120.000-0.1162No
49TMEM130transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]133010.000-0.1565No
50MYH1myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]141890.000-0.1805No
51KISS1KiSS-1 metastasis suppressor [Source:HGNC Symbol;Acc:HGNC:6341]142040.000-0.1809No
52MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155310.000-0.2168No
53BEX1brain expressed X-linked 1 [Source:HGNC Symbol;Acc:HGNC:1036]165040.000-0.2431No
54TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170730.000-0.2585No
55SERPINB7serpin family B member 7 [Source:HGNC Symbol;Acc:HGNC:13902]177470.000-0.2767No
56CXCL12C-X-C motif chemokine ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]188470.000-0.3065No
57CXCL6C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]193660.000-0.3205No
58TRPC3transient receptor potential cation channel subfamily C member 3 [Source:HGNC Symbol;Acc:HGNC:12335]199760.000-0.3370No
59TRPC4transient receptor potential cation channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:12336]199780.000-0.3370No
60SLC16A5solute carrier family 16 member 5 [Source:HGNC Symbol;Acc:HGNC:10926]212640.000-0.3718No
61C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]218010.000-0.3863No
62KRT25keratin 25 [Source:HGNC Symbol;Acc:HGNC:30839]218280.000-0.3870No
63KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]218760.000-0.3883No
64CYP4B1cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]221230.000-0.3950No
65SNORD22small nucleolar RNA, C/D box 22 [Source:HGNC Symbol;Acc:HGNC:10145]222440.000-0.3982No
66SAMD11sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28706]232310.000-0.4249No
67ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]260190.000-0.5004No
68IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]27512-0.027-0.5407No
69CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]27531-0.030-0.5410No
70CIAPIN1cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:28050]27533-0.031-0.5409No
71NUP88nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]27544-0.034-0.5410No
72LYARLy1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]27737-0.068-0.5459No
73SMSspermine synthase [Source:HGNC Symbol;Acc:HGNC:11123]27792-0.076-0.5469No
74DRAP1DR1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:3019]27962-0.097-0.5510No
75HERC4HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:24521]27979-0.100-0.5510No
76PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]29300-0.296-0.5853No
77FAM216Afamily with sequence similarity 216 member A [Source:HGNC Symbol;Acc:HGNC:30180]29308-0.297-0.5840No
78NOC2LNOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:24517]29346-0.304-0.5835No
79ARHGEF1Rho guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:681]29447-0.319-0.5847No
80YEATS4YEATS domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24859]29530-0.331-0.5852No
81MT1Lmetallothionein 1L, pseudogene [Source:HGNC Symbol;Acc:HGNC:7404]29776-0.365-0.5901No
82IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]29779-0.366-0.5883No
83LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30577-0.490-0.6075No
84TEX30testis expressed 30 [Source:HGNC Symbol;Acc:HGNC:25188]30816-0.530-0.6114No
85FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]30817-0.530-0.6087No
86DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]30896-0.541-0.6082No
87MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]31168-0.589-0.6126No
88TOMM34translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]31324-0.615-0.6138No
89KIFBPkinesin family binding protein [Source:HGNC Symbol;Acc:HGNC:23419]31381-0.630-0.6122No
90COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31382-0.630-0.6091No
91NUDCD1NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]31420-0.636-0.6070No
92YIPF3Yip1 domain family member 3 [Source:HGNC Symbol;Acc:HGNC:21023]31650-0.679-0.6098No
93PPP5Cprotein phosphatase 5 catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9322]31784-0.705-0.6100No
94ITGA6integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]31951-0.743-0.6108No
95POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]31959-0.744-0.6073No
96HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32189-0.808-0.6096No
97HAUS2HAUS augmin like complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25530]32241-0.821-0.6069No
98EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]32301-0.840-0.6044No
99NUDCnuclear distribution C, dynein complex regulator [Source:HGNC Symbol;Acc:HGNC:8045]32712-0.948-0.6108No
100PGM2phosphoglucomutase 2 [Source:HGNC Symbol;Acc:HGNC:8906]33129-1.071-0.6168Yes
101TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]33185-1.090-0.6129Yes
102NDC1NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]33279-1.121-0.6099Yes
103TPM2tropomyosin 2 [Source:HGNC Symbol;Acc:HGNC:12011]33363-1.148-0.6065Yes
104LMNB2lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]33381-1.154-0.6013Yes
105CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33387-1.156-0.5958Yes
106FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33397-1.158-0.5903Yes
107UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]33456-1.174-0.5861Yes
108CMC2C-X9-C motif containing 2 [Source:HGNC Symbol;Acc:HGNC:24447]33500-1.191-0.5814Yes
109ACTL6Aactin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]33575-1.221-0.5774Yes
110TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]33611-1.235-0.5723Yes
111SLC25A11solute carrier family 25 member 11 [Source:HGNC Symbol;Acc:HGNC:10981]33653-1.250-0.5672Yes
112POLR3KRNA polymerase III subunit K [Source:HGNC Symbol;Acc:HGNC:14121]33690-1.262-0.5620Yes
113SLF1SMC5-SMC6 complex localization factor 1 [Source:HGNC Symbol;Acc:HGNC:25408]33755-1.283-0.5574Yes
114RAD18RAD18 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:18278]33847-1.318-0.5534Yes
115CDC7cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]33884-1.331-0.5478Yes
116DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]34013-1.377-0.5445Yes
117NMBneuromedin B [Source:HGNC Symbol;Acc:HGNC:7842]34107-1.407-0.5401Yes
118HMGB1high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]34140-1.424-0.5339Yes
119KATNAL1katanin catalytic subunit A1 like 1 [Source:HGNC Symbol;Acc:HGNC:28361]34374-1.515-0.5328Yes
120CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]34381-1.518-0.5255Yes
121CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34486-1.559-0.5206Yes
122ZNF367zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]34624-1.612-0.5164Yes
123FANCAFA complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]34810-1.702-0.5130Yes
124MTHFD1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:7432]34853-1.722-0.5057Yes
125CDK5cyclin dependent kinase 5 [Source:HGNC Symbol;Acc:HGNC:1774]34867-1.729-0.4975Yes
126CTPS1CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]34882-1.740-0.4894Yes
127AP1S2adaptor related protein complex 1 subunit sigma 2 [Source:HGNC Symbol;Acc:HGNC:560]34976-1.789-0.4831Yes
128MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35062-1.840-0.4763Yes
129TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]35064-1.841-0.4673Yes
130PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35085-1.852-0.4587Yes
131CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]35199-1.931-0.4523Yes
132CCDC34coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:HGNC:25079]35240-1.957-0.4437Yes
133TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]35373-2.046-0.4372Yes
134ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]35412-2.072-0.4281Yes
135S1PR1sphingosine-1-phosphate receptor 1 [Source:HGNC Symbol;Acc:HGNC:3165]35609-2.201-0.4225Yes
136TSPAN13tetraspanin 13 [Source:HGNC Symbol;Acc:HGNC:21643]35690-2.268-0.4135Yes
137GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]35779-2.351-0.4044Yes
138BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]35824-2.393-0.3938Yes
139MAZMYC associated zinc finger protein [Source:HGNC Symbol;Acc:HGNC:6914]35960-2.514-0.3851Yes
140EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36065-2.624-0.3750Yes
141PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36068-2.625-0.3621Yes
142CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36083-2.637-0.3495Yes
143SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]36112-2.665-0.3371Yes
144GINS3GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]36250-2.795-0.3271Yes
145FAM83Dfamily with sequence similarity 83 member D [Source:HGNC Symbol;Acc:HGNC:16122]36390-2.970-0.3162Yes
146UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36415-3.003-0.3021Yes
147GYS1glycogen synthase 1 [Source:HGNC Symbol;Acc:HGNC:4706]36443-3.044-0.2879Yes
148POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36466-3.065-0.2734Yes
149PAICSphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase [Source:HGNC Symbol;Acc:HGNC:8587]36469-3.069-0.2583Yes
150SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]36473-3.076-0.2433Yes
151KCNC4potassium voltage-gated channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:6236]36475-3.082-0.2281Yes
152UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]36476-3.083-0.2130Yes
153MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36508-3.121-0.1984Yes
154TCF19transcription factor 19 [Source:HGNC Symbol;Acc:HGNC:11629]36613-3.282-0.1851Yes
155ANLNanillin actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]36634-3.330-0.1692Yes
156CHEK2checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]36690-3.417-0.1539Yes
157NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36691-3.417-0.1371Yes
158KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36700-3.426-0.1205Yes
159ALKBH7alkB homolog 7 [Source:HGNC Symbol;Acc:HGNC:21306]36768-3.556-0.1048Yes
160CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]36812-3.660-0.0879Yes
161FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36828-3.703-0.0701Yes
162CLSPNclaspin [Source:HGNC Symbol;Acc:HGNC:19715]36829-3.704-0.0519Yes
163BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36873-3.821-0.0342Yes
164RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36939-3.976-0.0164Yes
165HIP1huntingtin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:4913]36991-4.1640.0027Yes
Table: GSEA details [plain text format]



Fig 2: CSR_LATE_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_LATE_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for CSR_LATE_UP.V1_UP