Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.4562108
Normalized Enrichment Score (NES)1.2077545
Nominal p-value0.08
FDR q-value0.14212342
FWER p-Value0.567
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]194.8360.0258Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]454.5580.0498Yes
3GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]514.4800.0740Yes
4ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]554.4440.0981Yes
5MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]614.4050.1219Yes
6EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]764.2400.1446Yes
7ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]994.0460.1659Yes
8SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1004.0440.1879Yes
9ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1233.9210.2086Yes
10BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]1403.8260.2290Yes
11JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1563.6890.2486Yes
12CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]2103.3740.2655Yes
13ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]2972.9460.2792Yes
14ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]2982.9310.2951Yes
15TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]3702.7050.3079Yes
16TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]4082.5800.3209Yes
17UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]5032.3600.3312Yes
18STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]5142.3280.3435Yes
19RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]5962.1400.3530Yes
20GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]6242.1110.3637Yes
21ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]6801.9850.3730Yes
22C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]7401.9140.3818Yes
23NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]7611.8740.3914Yes
24TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]9041.6850.3967Yes
25RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]10231.5550.4020Yes
26MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]10851.4790.4084Yes
27ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]10921.4740.4162Yes
28ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]12561.3450.4191Yes
29TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]13101.3090.4248Yes
30ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]13111.3090.4319Yes
31NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]13481.2800.4379Yes
32FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]15921.1470.4375Yes
33LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]16291.1270.4427Yes
34SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]17491.0580.4452Yes
35BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]17781.0480.4501Yes
36WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]19080.9920.4520Yes
37ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]22280.8460.4480Yes
38MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]23340.8010.4495Yes
39MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]23890.7830.4523Yes
40GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]26830.6810.4481Yes
41PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]28380.6390.4474Yes
42MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]29890.6040.4466Yes
43BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]30040.6010.4495Yes
44UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]30730.5850.4508Yes
45KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]31260.5710.4525Yes
46BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]32220.5460.4529Yes
47PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]32400.5420.4554Yes
48LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]33840.5100.4543Yes
49NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]35290.4740.4529Yes
50UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]36890.4400.4510Yes
51MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]36970.4390.4532Yes
52DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]37490.4310.4542Yes
53EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]37800.4250.4557Yes
54DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]38440.4120.4562Yes
55PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]41030.3590.4512No
56SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]41380.3520.4522No
57ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]41870.3420.4527No
58APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]41920.3410.4545No
59HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]43320.3110.4524No
60MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]43990.2950.4522No
61CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]44130.2910.4534No
62AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]44910.2810.4529No
63LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]45030.2780.4541No
64ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]45530.2660.4542No
65FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]45590.2650.4555No
66RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]47770.2250.4509No
67USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]48150.2170.4510No
68NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]48340.2120.4517No
69LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]48920.2020.4512No
70PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]51950.1530.4439No
71B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]53030.1290.4417No
72SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]56590.0590.4324No
73LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]58370.0230.4277No
74FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]59220.0070.4255No
75FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]65490.0000.4085No
76TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]82540.0000.3624No
77DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]87930.0000.3478No
78C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]89360.0000.3440No
79ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]94330.0000.3305No
80NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]95680.0000.3269No
81CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]106650.0000.2972No
82ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]111800.0000.2833No
83IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]114830.0000.2751No
84PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]116950.0000.2694No
85CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]119920.0000.2614No
86TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]123580.0000.2515No
87GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]126560.0000.2434No
88GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]127780.0000.2402No
89ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]131160.0000.2310No
90SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]135430.0000.2195No
91REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]136640.0000.2163No
92TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]140870.0000.2048No
93SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]158620.0000.1568No
94FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]169100.0000.1284No
95RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]169120.0000.1284No
96VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]172630.0000.1189No
97PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]175770.0000.1104No
98DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]184130.0000.0878No
99BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]190040.0000.0718No
100BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]190060.0000.0718No
101RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]202720.0000.0375No
102INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]202850.0000.0372No
103TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]204400.0000.0330No
104KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]205830.0000.0292No
105SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]207540.0000.0246No
106SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]212630.0000.0108No
107C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]218010.000-0.0037No
108CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]228650.000-0.0325No
109FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]234920.000-0.0495No
110LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]235810.000-0.0519No
111LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]238290.000-0.0585No
112ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]257800.000-0.1114No
113GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]266610.000-0.1352No
114MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]273100.000-0.1528No
115BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]27564-0.037-0.1594No
116EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]27646-0.053-0.1613No
117TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]27785-0.075-0.1646No
118GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]28056-0.113-0.1713No
119ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]28170-0.131-0.1737No
120NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]28218-0.138-0.1742No
121STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]28362-0.159-0.1772No
122RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]28489-0.176-0.1797No
123TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]28693-0.202-0.1841No
124SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]28823-0.221-0.1864No
125UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]29285-0.294-0.1973No
126TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]29359-0.305-0.1976No
127EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]29394-0.310-0.1968No
128VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]29458-0.320-0.1968No
129TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]29921-0.385-0.2072No
130MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]30100-0.414-0.2098No
131DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]30135-0.418-0.2084No
132FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]30196-0.429-0.2077No
133VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]30402-0.460-0.2108No
134LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]30460-0.469-0.2098No
135DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]30689-0.508-0.2132No
136DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]30725-0.515-0.2114No
137TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]31118-0.581-0.2188No
138PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]31147-0.586-0.2164No
139ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]31266-0.605-0.2163No
140RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]31801-0.706-0.2269No
141TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]32003-0.754-0.2283No
142DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]32246-0.823-0.2304No
143RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]32496-0.885-0.2323No
144ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]32722-0.950-0.2332No
145SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]33098-1.062-0.2376No
146EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]33148-1.077-0.2331No
147CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]33419-1.165-0.2341No
148DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]33643-1.247-0.2333No
149ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]33701-1.265-0.2280No
150PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]33959-1.358-0.2276No
151RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]34027-1.380-0.2219No
152MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]34238-1.462-0.2197No
153CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]34240-1.462-0.2117No
154TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]34292-1.483-0.2051No
155KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]34676-1.640-0.2065No
156MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]34718-1.656-0.1986No
157QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]34985-1.797-0.1961No
158RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]35329-2.013-0.1944No
159AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]35382-2.051-0.1847No
160NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]35529-2.141-0.1770No
161ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]35538-2.148-0.1656No
162CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]35588-2.189-0.1550No
163ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]35589-2.190-0.1431No
164TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]36174-2.734-0.1441No
165ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]36204-2.756-0.1299No
166H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]36236-2.786-0.1156No
167HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]36316-2.874-0.1021No
168RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36455-3.057-0.0893No
169CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]36682-3.407-0.0769No
170REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]36887-3.848-0.0615No
171TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36903-3.903-0.0407No
172TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36942-3.983-0.0201No
173KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]37039-4.4290.0014No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN