Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.43535128
Normalized Enrichment Score (NES)1.1820294
Nominal p-value0.020833334
FDR q-value0.12996988
FWER p-Value0.352
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]14.9940.0232Yes
2IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]104.9320.0460Yes
3ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]184.8490.0684Yes
4TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]434.5680.0890Yes
5IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]874.1610.1072Yes
6GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]894.1230.1264Yes
7BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]954.0750.1452Yes
8GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1763.5890.1598Yes
9SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2163.3380.1743Yes
10TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2203.3160.1896Yes
11CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]2413.2110.2040Yes
12SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]2443.1990.2189Yes
13CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]2513.1710.2335Yes
14BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]2803.0190.2468Yes
15GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]3422.7910.2581Yes
16CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]3432.7810.2711Yes
17BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]3622.7240.2833Yes
18PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]4372.5090.2930Yes
19DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]4562.4590.3039Yes
20IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]4962.3710.3139Yes
21CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]5012.3630.3248Yes
22MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]5812.1620.3327Yes
23ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]6422.0690.3408Yes
24CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]6602.0260.3497Yes
25SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]7311.9250.3568Yes
26ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]7411.9130.3655Yes
27SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]7471.8930.3741Yes
28CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]7601.8740.3826Yes
29TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]7991.8190.3900Yes
30IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]9411.6390.3938Yes
31CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]11501.4270.3948Yes
32XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]12061.3860.3998Yes
33BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]12981.3140.4034Yes
34ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]13111.3090.4092Yes
35PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]13181.3040.4151Yes
36FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]13201.3040.4212Yes
37TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]13871.2540.4252Yes
38TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]13991.2460.4307Yes
39PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]14791.2020.4342Yes
40HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]17931.0380.4305Yes
41SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]18801.0050.4329Yes
42PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]21350.8820.4301Yes
43BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]22050.8540.4322Yes
44ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]22360.8420.4354Yes
45CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]26750.6820.4267No
46IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]28900.6260.4238No
47PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]32670.5350.4161No
48ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]33490.5170.4163No
49MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]34350.4990.4163No
50DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]34990.4810.4169No
51DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]35220.4750.4185No
52DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]35660.4650.4195No
53IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]36110.4560.4204No
54BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]37890.4230.4176No
55CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]38910.4020.4167No
56GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]48110.2170.3929No
57BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]48530.2090.3927No
58RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]48650.2070.3934No
59DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]52240.1460.3844No
60CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]55870.0730.3749No
61APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]57500.0440.3707No
62BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]70140.0000.3365No
63CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]72120.0000.3312No
64PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]72990.0000.3289No
65GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]80390.0000.3089No
66FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]88090.0000.2880No
67GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]91980.0000.2775No
68HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]105130.0000.2420No
69LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]110190.0000.2283No
70PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]112030.0000.2233No
71EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]112110.0000.2231No
72IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]114940.0000.2155No
73ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]117190.0000.2094No
74TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]122740.0000.1944No
75CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]124570.0000.1895No
76BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]154860.0000.1075No
77CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]156750.0000.1024No
78DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]159510.0000.0950No
79F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]160750.0000.0916No
80F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]164130.0000.0825No
81AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]165570.0000.0786No
82TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170730.0000.0647No
83HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]172960.0000.0587No
84DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]180560.0000.0381No
85LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]186940.0000.0209No
86AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]198600.000-0.0107No
87FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]201950.000-0.0197No
88IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]204410.000-0.0263No
89SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]214350.000-0.0532No
90KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]218760.000-0.0651No
91CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]222380.000-0.0749No
92CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]229250.000-0.0935No
93CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]230060.000-0.0957No
94IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]245990.000-0.1388No
95PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]255120.000-0.1635No
96CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]266530.000-0.1943No
97TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]273590.000-0.2134No
98BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]27652-0.054-0.2211No
99TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]27785-0.075-0.2243No
100NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27810-0.079-0.2246No
101CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]28155-0.129-0.2333No
102PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]28325-0.154-0.2372No
103VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28905-0.235-0.2517No
104NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]28979-0.245-0.2526No
105IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]29053-0.258-0.2534No
106PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]29159-0.273-0.2549No
107MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]29563-0.336-0.2643No
108BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29589-0.340-0.2634No
109GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29932-0.388-0.2708No
110SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]30037-0.403-0.2718No
111BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]30657-0.504-0.2862No
112JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]30739-0.516-0.2860No
113SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]30752-0.518-0.2839No
114PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]30883-0.540-0.2849No
115CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]31181-0.593-0.2902No
116BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]32365-0.855-0.3182No
117EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]32477-0.881-0.3171No
118RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]32496-0.885-0.3135No
119DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]32877-0.999-0.3191No
120ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]32970-1.030-0.3168No
121RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]33358-1.147-0.3220No
122RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]33385-1.155-0.3173No
123TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]33583-1.224-0.3169No
124GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]33845-1.317-0.3179No
125PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]33917-1.343-0.3135No
126CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]33978-1.364-0.3088No
127SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]33981-1.365-0.3025No
128CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]34001-1.372-0.2966No
129MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]34114-1.410-0.2931No
130CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34224-1.458-0.2893No
131HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]34312-1.491-0.2847No
132CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34486-1.559-0.2821No
133BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]34630-1.614-0.2784No
134DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]34658-1.630-0.2716No
135LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]34741-1.670-0.2660No
136RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]34851-1.721-0.2610No
137PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]34858-1.723-0.2531No
138ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]35030-1.824-0.2492No
139DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]35224-1.950-0.2454No
140CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]35227-1.952-0.2363No
141RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35244-1.959-0.2277No
142LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]35353-2.028-0.2211No
143CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35418-2.075-0.2132No
144PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35447-2.096-0.2042No
145BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]35708-2.283-0.2006No
146CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35755-2.327-0.1910No
147EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35786-2.355-0.1809No
148FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]35875-2.440-0.1719No
149ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36118-2.672-0.1660No
150EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]36330-2.895-0.1582No
151CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36438-3.035-0.1470No
152TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36442-3.043-0.1329No
153GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]36452-3.054-0.1189No
154TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36461-3.062-0.1049No
155GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36617-3.295-0.0937No
156GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36666-3.381-0.0793No
157BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36766-3.542-0.0655No
158WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36844-3.755-0.0501No
159H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36921-3.943-0.0338No
160PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]36966-4.087-0.0159No
161BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]36985-4.1330.0028No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS