Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.46712813
Normalized Enrichment Score (NES)-0.9921859
Nominal p-value0.5101172
FDR q-value0.8776429
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]214.8230.0295No
2PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]824.1840.0540No
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]904.1070.0795No
4NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]1923.4980.0986No
5HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]3602.7300.1111No
6ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]3612.7240.1281No
7COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]3742.6940.1446No
8POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]7511.8880.1462No
9NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]7931.8310.1565No
10GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]11481.4280.1559No
11ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]12861.3180.1604No
12APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]13711.2660.1660No
13ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]14311.2300.1721No
14GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]14711.2050.1786No
15GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]14881.1950.1856No
16GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]17271.0720.1859No
17GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]18291.0250.1895No
18BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]18871.0030.1942No
19ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]20340.9270.1961No
20TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]21550.8730.1983No
21STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]22180.8490.2019No
22SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]22600.8330.2060No
23POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]23580.7950.2083No
24POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]23980.7780.2121No
25SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]26300.6990.2102No
26ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]28930.6260.2071No
27SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]29860.6050.2083No
28ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]29870.6050.2121No
29ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]30900.5800.2130No
30DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]32160.5480.2130No
31RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]32850.5310.2145No
32RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]33420.5180.2162No
33SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]33930.5080.2180No
34CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]35140.4770.2178No
35PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]35890.4610.2186No
36VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]35970.4600.2213No
37POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]36280.4530.2233No
38NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]37580.4300.2225No
39POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]37610.4300.2251No
40EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]38560.4100.2252No
41POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]39330.3910.2255No
42TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]40010.3730.2261No
43CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]41180.3560.2251No
44TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]45670.2630.2146No
45SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]46690.2410.2134No
46TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]51530.1600.2013No
47TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]51990.1520.2011No
48POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]53660.1170.1973No
49DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]56050.0700.1913No
50POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]56940.0540.1893No
51POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]57120.0530.1891No
52NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]57530.0440.1883No
53SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]58350.0240.1863No
54BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]156950.000-0.0806No
55BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]178170.000-0.1380No
56CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]228790.000-0.2750No
57NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]235410.000-0.2929No
58ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]260190.000-0.3600No
59TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]27445-0.013-0.3985No
60SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]27568-0.037-0.4015No
61ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]27605-0.045-0.4022No
62CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]27752-0.070-0.4057No
63ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]27762-0.070-0.4055No
64POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]28190-0.133-0.4163No
65RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]28231-0.139-0.4165No
66POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]28265-0.144-0.4165No
67SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]28472-0.175-0.4210No
68RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]28624-0.192-0.4238No
69POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]29149-0.271-0.4363No
70POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]29303-0.296-0.4386No
71DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]29329-0.301-0.4374No
72POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]29369-0.307-0.4366No
73BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29589-0.340-0.4404No
74CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]29614-0.343-0.4389No
75ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]30096-0.414-0.4493No
76RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]30186-0.427-0.4491No
77EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]30538-0.484-0.4555No
78SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]30967-0.552-0.4637Yes
79GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]31083-0.572-0.4632Yes
80MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]31095-0.575-0.4599Yes
81UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]31120-0.581-0.4570Yes
82AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]31159-0.588-0.4543Yes
83ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]31231-0.599-0.4525Yes
84MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]31494-0.651-0.4555Yes
85CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]31498-0.651-0.4515Yes
86USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]31528-0.657-0.4482Yes
87XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]31556-0.662-0.4448Yes
88SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]31919-0.735-0.4500Yes
89NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]32038-0.763-0.4485Yes
90TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]32174-0.803-0.4471Yes
91GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]32180-0.806-0.4422Yes
92RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]32185-0.807-0.4373Yes
93TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32418-0.869-0.4381Yes
94TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]32420-0.869-0.4327Yes
95SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]32525-0.892-0.4300Yes
96GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]32557-0.903-0.4252Yes
97ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]32577-0.907-0.4200Yes
98DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]32604-0.918-0.4150Yes
99NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]32638-0.927-0.4101Yes
100MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]32654-0.931-0.4047Yes
101PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32753-0.958-0.4014Yes
102TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]32876-0.999-0.3984Yes
103TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]32975-1.032-0.3947Yes
104POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]33068-1.052-0.3906Yes
105POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]33205-1.098-0.3874Yes
106RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33208-1.098-0.3806Yes
107HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]33340-1.140-0.3770Yes
108POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]33356-1.145-0.3703Yes
109AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]33395-1.157-0.3641Yes
110FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33397-1.158-0.3569Yes
111NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]33415-1.164-0.3501Yes
112UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]33456-1.174-0.3438Yes
113VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]33471-1.180-0.3369Yes
114IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]33532-1.202-0.3310Yes
115TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]33554-1.213-0.3240Yes
116SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]33642-1.247-0.3185Yes
117AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]33659-1.253-0.3112Yes
118POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]33686-1.261-0.3040Yes
119NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]33745-1.282-0.2975Yes
120POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]33753-1.283-0.2897Yes
121DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]33995-1.370-0.2877Yes
122DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]34095-1.401-0.2816Yes
123GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]34111-1.408-0.2732Yes
124RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]34180-1.439-0.2661Yes
125VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]34215-1.456-0.2579Yes
126GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]34403-1.528-0.2535Yes
127POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34420-1.534-0.2443Yes
128NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]34424-1.535-0.2348Yes
129ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]34441-1.541-0.2256Yes
130ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]34587-1.599-0.2196Yes
131NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]34681-1.642-0.2118Yes
132ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]34754-1.676-0.2033Yes
133RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]34783-1.690-0.1935Yes
134PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35085-1.852-0.1901Yes
135POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]35129-1.886-0.1795Yes
136RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]35198-1.930-0.1693Yes
137RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]35348-2.023-0.1607Yes
138AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]35578-2.178-0.1533Yes
139REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]35587-2.189-0.1398Yes
140NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]35791-2.363-0.1306Yes
141RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35830-2.402-0.1166Yes
142NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36058-2.618-0.1064Yes
143POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]36168-2.723-0.0924Yes
144RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36428-3.019-0.0805Yes
145POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36466-3.065-0.0624Yes
146POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]36468-3.069-0.0433Yes
147DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36484-3.091-0.0244Yes
148LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36576-3.229-0.0067Yes
149GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36617-3.2950.0128Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR