Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.8608462
Normalized Enrichment Score (NES)2.1649032
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]154.8720.0222Yes
2ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]184.8490.0446Yes
3MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]204.8280.0670Yes
4CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]214.8230.0894Yes
5USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]354.6650.1106Yes
6OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]374.6630.1322Yes
7DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]464.5430.1531Yes
8IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]474.5100.1740Yes
9GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]514.4800.1947Yes
10IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]544.4510.2153Yes
11IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]574.4310.2358Yes
12PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]754.2510.2550Yes
13DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]774.2360.2747Yes
14STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]914.1060.2933Yes
15IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]944.0830.3122Yes
16HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]964.0710.3311Yes
17IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]1034.0260.3496Yes
18PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]1103.9660.3678Yes
19TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]1123.9650.3862Yes
20SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]1183.9420.4043Yes
21SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]1243.9160.4224Yes
22CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]1283.9020.4404Yes
23EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]1333.8820.4583Yes
24OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]1543.6990.4749Yes
25UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]1723.6170.4912Yes
26LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]1743.6140.5079Yes
27EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]1773.5890.5245Yes
28HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]1863.5430.5407Yes
29TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]1953.4700.5566Yes
30IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]2083.3920.5720Yes
31MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]2093.3910.5877Yes
32TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2203.3160.6028Yes
33TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]2373.2340.6174Yes
34GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]2383.2320.6324Yes
35PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]2932.9720.6447Yes
36ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]3352.8060.6566Yes
37PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]3972.6250.6672Yes
38RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]4042.5970.6790Yes
39CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]4432.4910.6896Yes
40TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]4492.4720.7009Yes
41PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]4682.4360.7117Yes
42IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]4962.3710.7220Yes
43CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]5012.3630.7328Yes
44UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]5032.3600.7437Yes
45IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]5102.3410.7544Yes
46TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]5302.2790.7645Yes
47PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]5802.1640.7732Yes
48IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]6292.0940.7816Yes
49OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]6432.0670.7908Yes
50PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]6971.9610.7985Yes
51CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]7041.9540.8074Yes
52PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]7641.8690.8145Yes
53TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]7741.8590.8229Yes
54CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]8021.8110.8305Yes
55IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]9411.6390.8344Yes
56LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]10721.4970.8378Yes
57PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]11171.4520.8434Yes
58CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]11501.4270.8491Yes
59TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]12251.3710.8535Yes
60IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]14121.2400.8542Yes
61PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]15701.1660.8554Yes
62TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]15801.1550.8605Yes
63HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]17721.0500.8602Yes
64RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]19180.9870.8608Yes
65WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]33440.5180.8247No
66IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]34300.5000.8248No
67ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]37280.4340.8187No
68SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]38400.4130.8176No
69NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]42780.3240.8073No
70B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]46310.2460.7990No
71CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]46880.2390.7986No
72SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]68070.0000.7413No
73CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]83850.0000.6987No
74BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]85050.0000.6955No
75LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]88580.0000.6860No
76RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]102240.0000.6491No
77IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]112040.0000.6226No
78BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]123040.0000.5929No
79IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]136960.0000.5553No
80TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]177390.0000.4460No
81NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]192490.0000.4052No
82IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]235240.0000.2897No
83LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]243940.0000.2662No
84IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]27482-0.0220.1829No
85PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]27941-0.0950.1709No
86IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]29919-0.3850.1193No
87ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]30789-0.5240.0982No
88C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]30895-0.5410.0979No
89NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]31873-0.7240.0748No
90SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]32621-0.9230.0589No
91IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]32733-0.9550.0603No
92LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]32794-0.9720.0632No
93MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]33243-1.1110.0563No
94CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]33327-1.1370.0593No
95CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]35275-1.9770.0158No
96TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]36442-3.043-0.0016No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36978-4.1100.0030No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE