Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_SPERMATOGENESIS
Enrichment Score (ES)-0.64566875
Normalized Enrichment Score (NES)-1.3563817
Nominal p-value0.007534984
FDR q-value0.09313561
FWER p-Value0.445
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_SPERMATOGENESIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1DPEP3dipeptidase 3 [Source:HGNC Symbol;Acc:HGNC:23029]4642.4450.0120No
2ELOVL3ELOVL fatty acid elongase 3 [Source:HGNC Symbol;Acc:HGNC:18047]5292.2800.0332No
3IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]9671.6160.0376No
4CCT6Bchaperonin containing TCP1 subunit 6B [Source:HGNC Symbol;Acc:HGNC:1621]12801.3240.0425No
5TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]13101.3090.0549No
6STAM2signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]17241.0750.0545No
7ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]21290.8840.0524No
8PGS1phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]24060.7760.0528No
9TSNtranslin [Source:HGNC Symbol;Acc:HGNC:12379]30100.6000.0425No
10PAPOLBpoly(A) polymerase beta [Source:HGNC Symbol;Acc:HGNC:15970]34180.5010.0365No
11HSPA1Lheat shock protein family A (Hsp70) member 1 like [Source:HGNC Symbol;Acc:HGNC:5234]35940.4600.0364No
12RAD17RAD17 checkpoint clamp loader component [Source:HGNC Symbol;Acc:HGNC:9807]38750.4060.0329No
13TEKT2tektin 2 [Source:HGNC Symbol;Acc:HGNC:11725]39000.4010.0363No
14AGFG1ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]40190.3690.0368No
15PIAS2protein inhibitor of activated STAT 2 [Source:HGNC Symbol;Acc:HGNC:17311]43370.3090.0313No
16CSNK2A2casein kinase 2 alpha 2 [Source:HGNC Symbol;Acc:HGNC:2459]45000.2780.0298No
17OAZ3ornithine decarboxylase antizyme 3 [Source:HGNC Symbol;Acc:HGNC:8097]47170.2330.0263No
18RPL39Lribosomal protein L39 like [Source:HGNC Symbol;Acc:HGNC:17094]57000.0540.0002No
19SCG5secretogranin V [Source:HGNC Symbol;Acc:HGNC:10816]61910.000-0.0130No
20SCG3secretogranin III [Source:HGNC Symbol;Acc:HGNC:13707]61930.000-0.0131No
21ADCYAP1adenylate cyclase activating polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:241]70010.000-0.0349No
22ART3ADP-ribosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:725]71080.000-0.0378No
23CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]72120.000-0.0405No
24ZC2HC1Czinc finger C2HC-type containing 1C [Source:HGNC Symbol;Acc:HGNC:20354]79090.000-0.0594No
25HOXB1homeobox B1 [Source:HGNC Symbol;Acc:HGNC:5111]84600.000-0.0743No
26ADAM2ADAM metallopeptidase domain 2 [Source:HGNC Symbol;Acc:HGNC:198]85380.000-0.0763No
27ADAD1adenosine deaminase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30713]86920.000-0.0805No
28CAMK4calcium/calmodulin dependent protein kinase IV [Source:HGNC Symbol;Acc:HGNC:1464]87130.000-0.0810No
29CRISP2cysteine rich secretory protein 2 [Source:HGNC Symbol;Acc:HGNC:12024]87540.000-0.0821No
30NPY5Rneuropeptide Y receptor Y5 [Source:HGNC Symbol;Acc:HGNC:7958]87610.000-0.0823No
31DMRT1doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]92850.000-0.0964No
32GSTM3glutathione S-transferase mu 3 [Source:HGNC Symbol;Acc:HGNC:4635]93800.000-0.0990No
33GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]96780.000-0.1070No
34TULP2TUB like protein 2 [Source:HGNC Symbol;Acc:HGNC:12424]98490.000-0.1116No
35CFTRCF transmembrane conductance regulator [Source:HGNC Symbol;Acc:HGNC:1884]98830.000-0.1125No
36LDHClactate dehydrogenase C [Source:HGNC Symbol;Acc:HGNC:6544]108210.000-0.1378No
37PRM2protamine 2 [Source:HGNC Symbol;Acc:HGNC:9448]112790.000-0.1502No
38SEPTIN4septin 4 [Source:HGNC Symbol;Acc:HGNC:9165]114580.000-0.1550No
39JAM3junctional adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:15532]118100.000-0.1645No
40MEP1Bmeprin A subunit beta [Source:HGNC Symbol;Acc:HGNC:7020]122100.000-0.1753No
41THEGtheg spermatid protein [Source:HGNC Symbol;Acc:HGNC:13706]125590.000-0.1847No
42TCP11t-complex 11 [Source:HGNC Symbol;Acc:HGNC:11658]142880.000-0.2315No
43TNP2transition protein 2 [Source:HGNC Symbol;Acc:HGNC:11952]148060.000-0.2455No
44TNP1transition protein 1 [Source:HGNC Symbol;Acc:HGNC:11951]148080.000-0.2455No
45HTR5A5-hydroxytryptamine receptor 5A [Source:HGNC Symbol;Acc:HGNC:5300]155470.000-0.2655No
46CLVS1clavesin 1 [Source:HGNC Symbol;Acc:HGNC:23139]156710.000-0.2688No
47MTNR1Amelatonin receptor 1A [Source:HGNC Symbol;Acc:HGNC:7463]157530.000-0.2710No
48DCCDCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]159460.000-0.2762No
49ACTL7Bactin like 7B [Source:HGNC Symbol;Acc:HGNC:162]160230.000-0.2783No
50GPR182G protein-coupled receptor 182 [Source:HGNC Symbol;Acc:HGNC:13708]163140.000-0.2861No
51GAPDHSglyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:HGNC:24864]164170.000-0.2889No
52AKAP4A-kinase anchoring protein 4 [Source:HGNC Symbol;Acc:HGNC:374]165720.000-0.2930No
53DMC1DNA meiotic recombinase 1 [Source:HGNC Symbol;Acc:HGNC:2927]168390.000-0.3002No
54TKTL1transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]171640.000-0.3090No
55HBZhemoglobin subunit zeta [Source:HGNC Symbol;Acc:HGNC:4835]172110.000-0.3102No
56SYCP1synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]177920.000-0.3259No
57DNAJB8DnaJ heat shock protein family (Hsp40) member B8 [Source:HGNC Symbol;Acc:HGNC:23699]184450.000-0.3436No
58IL12RB2interleukin 12 receptor subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:5972]195480.000-0.3734No
59PCSK1Nproprotein convertase subtilisin/kexin type 1 inhibitor [Source:HGNC Symbol;Acc:HGNC:17301]207060.000-0.4047No
60SHESrc homology 2 domain containing E [Source:HGNC Symbol;Acc:HGNC:27004]208220.000-0.4078No
61H1-6H1.6 linker histone, cluster member [Source:HGNC Symbol;Acc:HGNC:4720]226780.000-0.4580No
62DDX25DEAD-box helicase 25 [Source:HGNC Symbol;Acc:HGNC:18698]230380.000-0.4677No
63ACRV1acrosomal vesicle protein 1 [Source:HGNC Symbol;Acc:HGNC:127]232750.000-0.4741No
64TSSK2testis specific serine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11401]244240.000-0.5052No
65SNAP91synaptosome associated protein 91 [Source:HGNC Symbol;Acc:HGNC:14986]245540.000-0.5087No
66CST8cystatin 8 [Source:HGNC Symbol;Acc:HGNC:2480]245900.000-0.5096No
67ODF1outer dense fiber of sperm tails 1 [Source:HGNC Symbol;Acc:HGNC:8113]262690.000-0.5550No
68ZNRF4zinc and ring finger 4 [Source:HGNC Symbol;Acc:HGNC:17726]263060.000-0.5560No
69ACEangiotensin I converting enzyme [Source:HGNC Symbol;Acc:HGNC:2707]269720.000-0.5740No
70MAP7microtubule associated protein 7 [Source:HGNC Symbol;Acc:HGNC:6869]272590.000-0.5817No
71SLC2A5solute carrier family 2 member 5 [Source:HGNC Symbol;Acc:HGNC:11010]273380.000-0.5838No
72NAA11N-alpha-acetyltransferase 11, NatA catalytic subunit [Source:HGNC Symbol;Acc:HGNC:28125]27472-0.020-0.5872No
73PEBP1phosphatidylethanolamine binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8630]27710-0.063-0.5930No
74NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]27810-0.079-0.5949No
75CLGNcalmegin [Source:HGNC Symbol;Acc:HGNC:2060]28006-0.104-0.5991No
76ALOX15arachidonate 15-lipoxygenase [Source:HGNC Symbol;Acc:HGNC:433]28095-0.119-0.6003No
77TALDO1transaldolase 1 [Source:HGNC Symbol;Acc:HGNC:11559]28096-0.119-0.5991No
78PHF7PHD finger protein 7 [Source:HGNC Symbol;Acc:HGNC:18458]28198-0.134-0.6005No
79PACRGparkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152]28376-0.162-0.6037No
80DDX4DEAD-box helicase 4 [Source:HGNC Symbol;Acc:HGNC:18700]28409-0.165-0.6029No
81GAD1glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]28915-0.235-0.6142No
82IP6K1inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]29012-0.251-0.6143No
83BRAFB-Raf proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1097]29169-0.276-0.6157No
84VDAC3voltage dependent anion channel 3 [Source:HGNC Symbol;Acc:HGNC:12674]30055-0.406-0.6356No
85COILcoilin [Source:HGNC Symbol;Acc:HGNC:2184]30236-0.436-0.6361No
86PHKG2phosphorylase kinase catalytic subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:8931]30295-0.445-0.6332No
87YBX2Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]30353-0.453-0.6301No
88MTORmechanistic target of rapamycin kinase [Source:HGNC Symbol;Acc:HGNC:3942]30676-0.506-0.6338No
89POMCproopiomelanocortin [Source:HGNC Symbol;Acc:HGNC:9201]31117-0.580-0.6398Yes
90ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]31202-0.596-0.6361Yes
91CLPBcaseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]31281-0.607-0.6321Yes
92PSMG1proteasome assembly chaperone 1 [Source:HGNC Symbol;Acc:HGNC:3043]31442-0.640-0.6300Yes
93PDHA2pyruvate dehydrogenase E1 subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:8807]31620-0.674-0.6280Yes
94SIRT1sirtuin 1 [Source:HGNC Symbol;Acc:HGNC:14929]32019-0.758-0.6312Yes
95CNIH2cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]32041-0.764-0.6241Yes
96ACRBPacrosin binding protein [Source:HGNC Symbol;Acc:HGNC:17195]32133-0.788-0.6186Yes
97TNNI3troponin I3, cardiac type [Source:HGNC Symbol;Acc:HGNC:11947]32349-0.849-0.6159Yes
98GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]32393-0.863-0.6084Yes
99MAST2microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]32481-0.883-0.6019Yes
100MLLT10MLLT10 histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]32624-0.924-0.5964Yes
101NOS1nitric oxide synthase 1 [Source:HGNC Symbol;Acc:HGNC:7872]32647-0.929-0.5877Yes
102HSPA2heat shock protein family A (Hsp70) member 2 [Source:HGNC Symbol;Acc:HGNC:5235]32932-1.016-0.5852Yes
103CHRM4cholinergic receptor muscarinic 4 [Source:HGNC Symbol;Acc:HGNC:1953]33227-1.104-0.5820Yes
104PGK2phosphoglycerate kinase 2 [Source:HGNC Symbol;Acc:HGNC:8898]33300-1.126-0.5726Yes
105PCSK4proprotein convertase subtilisin/kexin type 4 [Source:HGNC Symbol;Acc:HGNC:8746]33353-1.144-0.5625Yes
106TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]33611-1.235-0.5571Yes
107GSG1germ cell associated 1 [Source:HGNC Symbol;Acc:HGNC:19716]33667-1.255-0.5460Yes
108PARP2poly(ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]33694-1.264-0.5340Yes
109CHFRcheckpoint with forkhead and ring finger domains [Source:HGNC Symbol;Acc:HGNC:20455]33750-1.282-0.5226Yes
110SLC12A2solute carrier family 12 member 2 [Source:HGNC Symbol;Acc:HGNC:10911]33968-1.361-0.5148Yes
111SPATA6spermatogenesis associated 6 [Source:HGNC Symbol;Acc:HGNC:18309]34274-1.478-0.5082Yes
112LPIN1lipin 1 [Source:HGNC Symbol;Acc:HGNC:13345]34304-1.489-0.4940Yes
113IDEinsulin degrading enzyme [Source:HGNC Symbol;Acc:HGNC:5381]34342-1.505-0.4798Yes
114CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]34381-1.518-0.4656Yes
115MLF1myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:HGNC:7125]34406-1.529-0.4509Yes
116NF2neurofibromin 2 [Source:HGNC Symbol;Acc:HGNC:7773]34618-1.611-0.4404Yes
117ZC3H14zinc finger CCCH-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20509]34631-1.615-0.4245Yes
118PRKAR2Aprotein kinase cAMP-dependent type II regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9391]34709-1.653-0.4100Yes
119HSPA4Lheat shock protein family A (Hsp70) member 4 like [Source:HGNC Symbol;Acc:HGNC:17041]34953-1.775-0.3987Yes
120IFT88intraflagellar transport 88 [Source:HGNC Symbol;Acc:HGNC:20606]35260-1.969-0.3872Yes
121AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35380-2.050-0.3698Yes
122NPHP1nephrocystin 1 [Source:HGNC Symbol;Acc:HGNC:7905]35620-2.211-0.3541Yes
123TOPBP1DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]35809-2.377-0.3353Yes
124CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]35813-2.385-0.3114Yes
125RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35830-2.402-0.2877Yes
126EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]36065-2.624-0.2676Yes
127STRBPspermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]36071-2.628-0.2413Yes
128GMCL1germ cell-less 1, spermatogenesis associated [Source:HGNC Symbol;Acc:HGNC:23843]36227-2.779-0.2176Yes
129DBF4DBF4 zinc finger [Source:HGNC Symbol;Acc:HGNC:17364]36273-2.821-0.1905Yes
130CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36367-2.940-0.1634Yes
131NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36546-3.187-0.1362Yes
132KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36710-3.442-0.1060Yes
133BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36780-3.580-0.0719Yes
134NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36841-3.749-0.0359Yes
135TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]37006-4.2360.0023Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_SPERMATOGENESIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_SPERMATOGENESIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_SPERMATOGENESIS