Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.61895263
Normalized Enrichment Score (NES)1.4301796
Nominal p-value0.022222223
FDR q-value0.039692186
FWER p-Value0.069
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]94.9350.0703Yes
2FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]864.1620.1278Yes
3SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1004.0440.1852Yes
4ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1233.9210.2407Yes
5JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1563.6890.2926Yes
6SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]1963.4640.3411Yes
7THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]2273.2790.3871Yes
8ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]2982.9310.4271Yes
9ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]3922.6400.4624Yes
10TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]4542.4680.4960Yes
11TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]5982.1390.5227Yes
12SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]7471.8930.5458Yes
13UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]10801.4830.5580Yes
14XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]12061.3860.5745Yes
15BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]14091.2420.5868Yes
16HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]16531.1140.5962Yes
17PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]18541.0140.6053Yes
18SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]18801.0050.6190Yes
19BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]33400.5190.5870No
20SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]33790.5110.5933No
21CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]49910.1790.5523No
22BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]52520.1410.5473No
23ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]54480.1020.5435No
24PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]55150.0880.5430No
25WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]71170.0000.4997No
26CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]91680.0000.4444No
27CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]124540.0000.3557No
28TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]132850.0000.3333No
29NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]192650.0000.1719No
30LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]201640.0000.1476No
31IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]204430.0000.1401No
32SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]27381-0.001-0.0472No
33TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]27447-0.014-0.0487No
34CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]28155-0.129-0.0660No
35FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]28288-0.147-0.0674No
36ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]28418-0.166-0.0685No
37MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28603-0.188-0.0708No
38RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]29257-0.291-0.0843No
39NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]29515-0.329-0.0865No
40SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]29521-0.330-0.0820No
41HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]29639-0.347-0.0801No
42APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]29675-0.351-0.0761No
43LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]30577-0.490-0.0934No
44ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]30702-0.510-0.0894No
45FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]30817-0.530-0.0849No
46PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]31190-0.594-0.0865No
47RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]31350-0.621-0.0819No
48SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]33084-1.057-0.1136No
49SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]34302-1.488-0.1252No
50BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]34630-1.614-0.1109No
51SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]35524-2.138-0.1045No
52TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]36027-2.579-0.0811No
53SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36689-3.416-0.0502No
54KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]37013-4.2640.0021No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING