Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_UV_RESPONSE_UP
Enrichment Score (ES)0.394895
Normalized Enrichment Score (NES)1.0785801
Nominal p-value0.125
FDR q-value0.26972878
FWER p-Value0.62
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UV_RESPONSE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]864.1620.0218Yes
2NR4A1nuclear receptor subfamily 4 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7980]1044.0150.0446Yes
3JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]1563.6890.0646Yes
4NFKBIANFKB inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:7797]1593.6630.0858Yes
5GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]1763.5890.1062Yes
6SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]2163.3380.1245Yes
7TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2203.3160.1436Yes
8SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]2443.1990.1615Yes
9FOSBFosB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:3797]2523.1670.1797Yes
10BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]2803.0190.1965Yes
11LYNLYN proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6735]3512.7550.2105Yes
12BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]3622.7240.2261Yes
13DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]4562.4590.2378Yes
14CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]4862.3980.2509Yes
15IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]4962.3710.2644Yes
16TFRCtransferrin receptor [Source:HGNC Symbol;Acc:HGNC:11763]5132.3330.2775Yes
17ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]6422.0690.2860Yes
18BTG1BTG anti-proliferation factor 1 [Source:HGNC Symbol;Acc:HGNC:1130]6811.9810.2965Yes
19STARD3StAR related lipid transfer domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17579]7751.8580.3047Yes
20ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]8121.7970.3142Yes
21MMP14matrix metallopeptidase 14 [Source:HGNC Symbol;Acc:HGNC:7160]8281.7820.3241Yes
22TMBIM6transmembrane BAX inhibitor motif containing 6 [Source:HGNC Symbol;Acc:HGNC:11723]9091.6840.3317Yes
23PLCL1phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]9481.6340.3402Yes
24GLSglutaminase [Source:HGNC Symbol;Acc:HGNC:4331]9611.6180.3492Yes
25CHKAcholine kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]10651.5040.3551Yes
26SELENOWselenoprotein W [Source:HGNC Symbol;Acc:HGNC:10752]10671.5030.3638Yes
27CYB5Bcytochrome b5 type B [Source:HGNC Symbol;Acc:HGNC:24374]12331.3670.3673Yes
28YKT6YKT6 v-SNARE homolog [Source:HGNC Symbol;Acc:HGNC:16959]13571.2730.3713Yes
29BAK1BCL2 antagonist/killer 1 [Source:HGNC Symbol;Acc:HGNC:949]13761.2610.3781Yes
30PPIFpeptidylprolyl isomerase F [Source:HGNC Symbol;Acc:HGNC:9259]16311.1260.3778Yes
31HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]17931.0380.3795Yes
32KLHDC3kelch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20704]19460.9710.3810Yes
33ALAS15'-aminolevulinate synthase 1 [Source:HGNC Symbol;Acc:HGNC:396]20910.9010.3823Yes
34TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]22380.8420.3832Yes
35HLA-Fmajor histocompatibility complex, class I, F [Source:HGNC Symbol;Acc:HGNC:4963]23330.8020.3853Yes
36CDO1cysteine dioxygenase type 1 [Source:HGNC Symbol;Acc:HGNC:1795]23450.7990.3897Yes
37EIF5eukaryotic translation initiation factor 5 [Source:HGNC Symbol;Acc:HGNC:3299]24600.7590.3910Yes
38PDAP1PDGFA associated protein 1 [Source:HGNC Symbol;Acc:HGNC:14634]25800.7180.3919Yes
39PRPF3pre-mRNA processing factor 3 [Source:HGNC Symbol;Acc:HGNC:17348]27100.6740.3923Yes
40SHOX2short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]28030.6480.3936Yes
41IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]28900.6260.3949Yes
42DDX21DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]33100.5250.3866No
43GRINAglutamate ionotropic receptor NMDA type subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:4589]33510.5170.3885No
44PRKCDprotein kinase C delta [Source:HGNC Symbol;Acc:HGNC:9399]36740.4440.3824No
45HNRNPUheterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]37370.4330.3832No
46BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]37890.4230.3843No
47STIP1stress induced phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11387]38790.4050.3842No
48CTSVcathepsin V [Source:HGNC Symbol;Acc:HGNC:2538]41930.3400.3777No
49ARRB2arrestin beta 2 [Source:HGNC Symbol;Acc:HGNC:712]43020.3180.3766No
50HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]43320.3110.3776No
51DGAT1diacylglycerol O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2843]45430.2680.3735No
52FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]45590.2650.3746No
53PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]45640.2640.3761No
54GRPEL1GrpE like 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:19696]46210.2500.3760No
55CYB5R1cytochrome b5 reductase 1 [Source:HGNC Symbol;Acc:HGNC:13397]46360.2450.3770No
56DNAJB1DnaJ heat shock protein family (Hsp40) member B1 [Source:HGNC Symbol;Acc:HGNC:5270]47620.2280.3750No
57MARK2microtubule affinity regulating kinase 2 [Source:HGNC Symbol;Acc:HGNC:3332]47850.2230.3757No
58CA2carbonic anhydrase 2 [Source:HGNC Symbol;Acc:HGNC:1373]48100.2170.3763No
59PPP1R2protein phosphatase 1 regulatory inhibitor subunit 2 [Source:HGNC Symbol;Acc:HGNC:9288]49060.1980.3749No
60NUP58nucleoporin 58 [Source:HGNC Symbol;Acc:HGNC:20261]49240.1940.3755No
61WIZWIZ zinc finger [Source:HGNC Symbol;Acc:HGNC:30917]52300.1450.3681No
62ATP6V1C1ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]54230.1080.3635No
63CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]55870.0730.3595No
64RPN1ribophorin I [Source:HGNC Symbol;Acc:HGNC:10381]57130.0520.3565No
65CLTBclathrin light chain B [Source:HGNC Symbol;Acc:HGNC:2091]58830.0150.3520No
66FOSFos proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:3796]59640.0010.3498No
67APOMapolipoprotein M [Source:HGNC Symbol;Acc:HGNC:13916]64760.0000.3360No
68AQP3aquaporin 3 (Gill blood group) [Source:HGNC Symbol;Acc:HGNC:636]67140.0000.3296No
69C4BPBcomplement component 4 binding protein beta [Source:HGNC Symbol;Acc:HGNC:1328]68590.0000.3257No
70NPTX2neuronal pentraxin 2 [Source:HGNC Symbol;Acc:HGNC:7953]70190.0000.3214No
71GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]91980.0000.2624No
72ONECUT1one cut homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8138]95320.0000.2534No
73CYP1A1cytochrome P450 family 1 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2595]103020.0000.2325No
74NTRK3neurotrophic receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:8033]106560.0000.2230No
75MAPK8IP2mitogen-activated protein kinase 8 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:6883]109110.0000.2161No
76IGFBP2insulin like growth factor binding protein 2 [Source:HGNC Symbol;Acc:HGNC:5471]114840.0000.2006No
77MSX1msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]123420.0000.1774No
78CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]124540.0000.1744No
79CDKN2Bcyclin dependent kinase inhibitor 2B [Source:HGNC Symbol;Acc:HGNC:1788]124800.0000.1737No
80TACR3tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]130420.0000.1585No
81HTR75-hydroxytryptamine receptor 7 [Source:HGNC Symbol;Acc:HGNC:5302]154570.0000.0932No
82CCKcholecystokinin [Source:HGNC Symbol;Acc:HGNC:1569]156730.0000.0874No
83GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]168360.0000.0559No
84PDLIM3PDZ and LIM domain 3 [Source:HGNC Symbol;Acc:HGNC:20767]176880.0000.0329No
85ICAM1intercellular adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5344]181890.0000.0193No
86NKX2-5NK2 homeobox 5 [Source:HGNC Symbol;Acc:HGNC:2488]191260.000-0.0060No
87TCHHtrichohyalin [Source:HGNC Symbol;Acc:HGNC:11791]197620.000-0.0232No
88COL2A1collagen type II alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2200]198760.000-0.0263No
89RETret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]204050.000-0.0406No
90EPCAMepithelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:11529]243750.000-0.1480No
91CHRNA5cholinergic receptor nicotinic alpha 5 subunit [Source:HGNC Symbol;Acc:HGNC:1959]246520.000-0.1555No
92FMO1flavin containing dimethylaniline monoxygenase 1 [Source:HGNC Symbol;Acc:HGNC:3769]270200.000-0.2196No
93BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]27652-0.054-0.2364No
94GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]27673-0.057-0.2366No
95RASGRP1RAS guanyl releasing protein 1 [Source:HGNC Symbol;Acc:HGNC:9878]28034-0.108-0.2457No
96KCNH2potassium voltage-gated channel subfamily H member 2 [Source:HGNC Symbol;Acc:HGNC:6251]28202-0.135-0.2494No
97TYRO3TYRO3 protein tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:12446]28649-0.195-0.2604No
98AMD1adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:457]28745-0.211-0.2617No
99ATP6V1FATPase H+ transporting V1 subunit F [Source:HGNC Symbol;Acc:HGNC:16832]28829-0.222-0.2627No
100LHX2LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]28861-0.228-0.2622No
101STK25serine/threonine kinase 25 [Source:HGNC Symbol;Acc:HGNC:11404]28938-0.240-0.2629No
102HSPA13heat shock protein family A (Hsp70) member 13 [Source:HGNC Symbol;Acc:HGNC:11375]28970-0.244-0.2623No
103POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]29369-0.307-0.2713No
104NXF1nuclear RNA export factor 1 [Source:HGNC Symbol;Acc:HGNC:8071]29482-0.324-0.2725No
105MGAT1alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:7044]29916-0.385-0.2820No
106CDC34cell division cycle 34, ubiqiutin conjugating enzyme [Source:HGNC Symbol;Acc:HGNC:1734]29951-0.391-0.2806No
107PTPRDprotein tyrosine phosphatase receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]29988-0.396-0.2793No
108EIF2S3eukaryotic translation initiation factor 2 subunit gamma [Source:HGNC Symbol;Acc:HGNC:3267]30009-0.398-0.2775No
109TGFBRAP1transforming growth factor beta receptor associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16836]30124-0.417-0.2782No
110CDC5Lcell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]30591-0.493-0.2880No
111SPRsepiapterin reductase [Source:HGNC Symbol;Acc:HGNC:11257]31251-0.602-0.3023No
112AGO2argonaute RISC catalytic component 2 [Source:HGNC Symbol;Acc:HGNC:3263]31933-0.738-0.3165No
113POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]31959-0.744-0.3128No
114AP2S1adaptor related protein complex 2 subunit sigma 1 [Source:HGNC Symbol;Acc:HGNC:565]31974-0.748-0.3089No
115FKBP4FKBP prolyl isomerase 4 [Source:HGNC Symbol;Acc:HGNC:3720]31996-0.752-0.3051No
116NAT1N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7645]32417-0.869-0.3114No
117CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]32619-0.922-0.3115No
118NPTXRneuronal pentraxin receptor [Source:HGNC Symbol;Acc:HGNC:7954]32725-0.952-0.3088No
119HSPA2heat shock protein family A (Hsp70) member 2 [Source:HGNC Symbol;Acc:HGNC:5235]32932-1.016-0.3085No
120SIGMAR1sigma non-opioid intracellular receptor 1 [Source:HGNC Symbol;Acc:HGNC:8157]33132-1.072-0.3077No
121POLG2DNA polymerase gamma 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9180]33138-1.074-0.3016No
122TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]33185-1.090-0.2965No
123CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]33327-1.137-0.2938No
124E2F5E2F transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:3119]33332-1.138-0.2873No
125MAOAmonoamine oxidase A [Source:HGNC Symbol;Acc:HGNC:6833]33361-1.148-0.2814No
126CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33387-1.156-0.2753No
127FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33397-1.158-0.2689No
128SLC6A8solute carrier family 6 member 8 [Source:HGNC Symbol;Acc:HGNC:11055]33463-1.177-0.2638No
129PARP2poly(ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]33694-1.264-0.2627No
130CLCN2chloride voltage-gated channel 2 [Source:HGNC Symbol;Acc:HGNC:2020]33907-1.338-0.2607No
131SLC6A12solute carrier family 6 member 12 [Source:HGNC Symbol;Acc:HGNC:11045]33956-1.356-0.2541No
132RXRBretinoid X receptor beta [Source:HGNC Symbol;Acc:HGNC:10478]34082-1.397-0.2494No
133PPATphosphoribosyl pyrophosphate amidotransferase [Source:HGNC Symbol;Acc:HGNC:9238]34113-1.410-0.2421No
134CREG1cellular repressor of E1A stimulated genes 1 [Source:HGNC Symbol;Acc:HGNC:2351]34250-1.466-0.2372No
135MRPL23mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]34252-1.468-0.2288No
136SLC25A4solute carrier family 25 member 4 [Source:HGNC Symbol;Acc:HGNC:10990]34396-1.525-0.2238No
137DLG4discs large MAGUK scaffold protein 4 [Source:HGNC Symbol;Acc:HGNC:2903]34615-1.610-0.2204No
138BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]34630-1.614-0.2114No
139SULT1A1sulfotransferase family 1A member 1 [Source:HGNC Symbol;Acc:HGNC:11453]34794-1.693-0.2060No
140RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]34851-1.721-0.1975No
141ABCB1ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]34877-1.739-0.1881No
142ACAA1acetyl-CoA acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:82]34938-1.770-0.1795No
143PRKACAprotein kinase cAMP-activated catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9380]34965-1.782-0.1699No
144EPHX1epoxide hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3401]35028-1.823-0.1610No
145TSTthiosulfate sulfurtransferase [Source:HGNC Symbol;Acc:HGNC:12388]35105-1.866-0.1522No
146ALDOAaldolase, fructose-bisphosphate A [Source:HGNC Symbol;Acc:HGNC:414]35130-1.888-0.1419No
147BSGbasigin (Ok blood group) [Source:HGNC Symbol;Acc:HGNC:1116]35300-1.994-0.1349No
148PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35447-2.096-0.1267No
149URODuroporphyrinogen decarboxylase [Source:HGNC Symbol;Acc:HGNC:12591]35710-2.284-0.1206No
150CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]35755-2.327-0.1083No
151RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35830-2.402-0.0964No
152OLFM1olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]35992-2.544-0.0860No
153ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]36118-2.672-0.0739No
154IL6STinterleukin 6 signal transducer [Source:HGNC Symbol;Acc:HGNC:6021]36147-2.703-0.0590No
155H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36457-3.057-0.0496No
156CCNE1cyclin E1 [Source:HGNC Symbol;Acc:HGNC:1589]36523-3.149-0.0331No
157RRADRRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:HGNC Symbol;Acc:HGNC:10446]36975-4.106-0.0215No
158RAB27ARAB27A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9766]37007-4.2430.0022No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UV_RESPONSE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UV_RESPONSE_UP: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UV_RESPONSE_UP